ID   A5AQ04_VITVI            Unreviewed;      1312 AA.
AC   A5AQ04;
DT   12-JUN-2007, integrated into UniProtKB/TrEMBL.
DT   12-JUN-2007, sequence version 1.
DT   27-MAR-2024, entry version 45.
DE   RecName: Full=Integrase catalytic domain-containing protein {ECO:0000259|PROSITE:PS50994};
GN   ORFNames=VITISV_034738 {ECO:0000313|EMBL:CAN71553.1};
OS   Vitis vinifera (Grape).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; Vitales; Vitaceae; Viteae; Vitis.
OX   NCBI_TaxID=29760 {ECO:0000313|EMBL:CAN71553.1};
RN   [1] {ECO:0000313|EMBL:CAN71553.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D.,
RA   Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D.,
RA   Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.,
RA   Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N.,
RA   Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A.,
RA   Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T.,
RA   Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
RA   Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J.,
RA   Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P.,
RA   Gutin A., Van de Peer Y., Salamini F., Viola R.;
RT   "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis
RT   vinifera L.): coping with a highly heterozygous genome.";
RL   PLoS ONE 2:e1326-e1326(2007).
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DR   EMBL; AM431883; CAN71553.1; -; Genomic_DNA.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR025724; GAG-pre-integrase_dom.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR013103; RVT_2.
DR   PANTHER; PTHR42648:SF24; RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEIN; 1.
DR   PANTHER; PTHR42648; TRANSPOSASE, PUTATIVE-RELATED; 1.
DR   Pfam; PF13976; gag_pre-integrs; 1.
DR   Pfam; PF14223; Retrotran_gag_2; 1.
DR   Pfam; PF00665; rve; 1.
DR   Pfam; PF07727; RVT_2; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
PE   4: Predicted;
FT   DOMAIN          441..622
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
FT   REGION          230..290
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          718..746
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          759..779
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1292..1312
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        233..252
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        261..290
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        721..739
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1298..1312
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1312 AA;  147139 MW;  6D209EA1AF7C230C CRC64;
     MASSTQTMPE IVSSQVTPTL NMSMLNHPLP IKLDRDNHIL WHTQMENVIY ANGFEDHIEG
     LRPCPPKTIS TGEVNPDFLV WRRYDRMILS WIYSSLTPEV MGQIVGLQTS HEAWTALQRS
     FSASTKARTM QLRLAFQTTK KGSLTMMEYI QKLKHISDSL AAIGEPVPEK DQILQLLSGL
     GAEYNPIVAS LTARDDDIQL HAVHSILLTH EQRLHLQTTX TEEDLLIANF XTHNRPRRSQ
     SNKPSQGKPP QSFMPTIRPD TLPDSRQQYP QGYRPNRFNN NRSRTNNRPQ CQLCGKFGHM
     VLSCYHRFDV NYQGPRAPAS STSQIGLTPP AQAMMAAPSS ASMDSWFLDS GATHHLSHTA
     ANIHNGTPYN GTDSVMVGKC VSKFCTDNNT ILEFHPSSFF VKDKDTKVTL LQGQLERGLY
     KFPTSSISSP TASPKHQVFL TKTQPTTMLW HQRFGHPSGV ILQKIFHTYL WGPAPVPSST
     GARYFLLLMD DYSRFVWFYL LPTKDQVHST FVQFKTLVEN QFQTTIKCLQ TBHGGEFIAL
     XKFLSLHGIL HRFSCPYTPE QNGRVERKMR HVVETGLTLL YTATLPSKFW XYAFTTAVTL
     INCMPSPLLN YSSPFSLLYK HPPDYFHFKV FGCLCYPHLK HLNSNKFQPR STPCIFLGYA
     PSHKGYLCLN PTTNRVYISR HVVFAETTFP FQALSXPSQQ SXHIPVTPXF PLPPSPILFP
     PTTSSXLATP SEXAPTSPPA SSLSLPPLIQ VPFVDEAAET PTTSLQDSTA PIPGHPMITR
     SKSGICKKKT YLTSLTIEPR TVKQALQDPN WKVAMEQEYQ ALLKNQTWSL VPPPSNAKII
     GCKWVFKLKH KPNGSIDRYK ARLVAQGFHQ TYGIDFFETF SPVVKPCTIR LVLSIAVSSN
     WPIKQLDVHN AFLNGDLQEQ VFMMQPPGFE DNSCPTHVCR LQKALYGLKQ APRAWFHKLS
     SFLLQIGFQC SRADASLFYF HSASDIIILL IYVDDILITG SNPSRVHQII SQLSSHFALR
     DLGDISYFLG IEVTRRSHAL HLNQQRYIHQ LLERANLHEA KSASTPGALG KLLSAADGEP
     LSALDATHYR SLVGALQYIT LTRPEISFAV NRACQYMARP TTSHLQAAKR ILRYLKGTAT
     HGISIHASPS LSLQGYTDAD WASCPDDRRS TSGFCLFFGT NLISWSSTKQ RVVSRSSAES
     EYRALALLAA EVSWVQFLLK ELCIPQQDTP LIWCDNISAT ALAANSVFHA RSKHIEIDLH
     FVRDKLADVF TKHVPSCQFS AARTRLSVVP RPVSLRGDDR QTPTSVADAS PP
//