ID   A5C6F8_VITVI            Unreviewed;      1065 AA.
AC   A5C6F8;
DT   12-JUN-2007, integrated into UniProtKB/TrEMBL.
DT   12-JUN-2007, sequence version 1.
DT   27-MAR-2024, entry version 49.
DE   RecName: Full=Retrotransposon gag domain-containing protein {ECO:0000259|Pfam:PF03732};
GN   ORFNames=VITISV_026015 {ECO:0000313|EMBL:CAN68702.1};
OS   Vitis vinifera (Grape).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; Vitales; Vitaceae; Viteae; Vitis.
OX   NCBI_TaxID=29760 {ECO:0000313|EMBL:CAN68702.1};
RN   [1] {ECO:0000313|EMBL:CAN68702.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D.,
RA   Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D.,
RA   Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.,
RA   Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N.,
RA   Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A.,
RA   Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T.,
RA   Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
RA   Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J.,
RA   Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P.,
RA   Gutin A., Van de Peer Y., Salamini F., Viola R.;
RT   "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis
RT   vinifera L.): coping with a highly heterozygous genome.";
RL   PLoS ONE 2:e1326-e1326(2007).
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DR   EMBL; AM483948; CAN68702.1; -; Genomic_DNA.
DR   AlphaFoldDB; A5C6F8; -.
DR   CDD; cd00303; retropepsin_like; 1.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 3.30.70.270; -; 2.
DR   Gene3D; 2.40.70.10; Acid Proteases; 1.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR   InterPro; IPR005162; Retrotrans_gag_dom.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   PANTHER; PTHR33067:SF37; ASP_PROTEASE DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR33067; ASP_PROTEASE DOMAIN-CONTAINING PROTEIN-RELATED; 1.
DR   Pfam; PF13650; Asp_protease_2; 1.
DR   Pfam; PF03732; Retrotrans_gag; 1.
DR   SUPFAM; SSF50630; Acid proteases; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
PE   4: Predicted;
FT   DOMAIN          94..187
FT                   /note="Retrotransposon gag"
FT                   /evidence="ECO:0000259|Pfam:PF03732"
FT   REGION          442..467
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1065 AA;  121629 MW;  01B633BFE6CF1D35 CRC64;
     METTPEDQHS HQGRQDNLNE FRSMRDRMHP PRMSAPSCIV PPTEQLVIRP YLVPLLPTFH
     GMESENPYAH IKKFEDVCNT FQEGGASIDL MRLKLFPFTL KDKAKIWLNS LRPRSIRSWT
     NLQAEFLKKF FPTHRTNGLK MQISNFSAKE NEKFYECWER YMEAINAYPH HGFDAWLLVS
     YFYDGMSSSM KQLLETMCGG DFMSKNPEEA MDFLSYVADV SRGWDEPTKG EVGKMKSQLN
     PFNAKAGMYT LKEDDDMKAK LAAMTRRLEE LELKRIHEVQ AVAEAPVQVK LCPNCQSYEH
     LVEECPAISA EREMYRDKAN VVGQFRPNNN APYGNTYNSS WRNHPNFSWK ARATQYQQPD
     PPSQQSSSLE QAMANLSKVV GDFVGKQETT NAQIYQRIDR VESMLNKRMD GMQNDMNQKF
     DNIQYSISRL TNLNTLQEKG RFPSQPYQNP KGVHEVESQE GESSQTKDVK ALITLRSGKK
     IEQPTPKPHV EKEEEIKKWK EMEDKESEIS EEKKDSNSTM NAIPEKELMK EEMLKKSTSP
     PFPQALHGKK GIRNATEILE VLRQVKVNIP LLDMIKQVPT YAKFLKDLCT IKRGLTVNKK
     AFLTEQVSVI LQCKSPLKYK DPGSPTISVM IGGKVVEKAL LDLGASVNLL PYSVYKQLGL
     GELKPTAITL SLADRSVKIP RGVIEDVLVQ VDNFYYPVDF IVLDTDPTVK EANLVPIILG
     RPFLATSNAI INCRNGLMQL TFGNMTLDLN IFYMSKKQIT PEEEEGPEEL CIIDTLVEEH
     CLSKSPIVLA TLQSWRKIEK ILPLFNEEEE AAAKKEIPKL NLKPLPVELK YTYLEENNQC
     PVVISSSLTS HQENCLMEVL KRCKKAIGWQ ISDLKGISPL VCIHHIYMEE EAKPIRQLQR
     RLNPHLQEVV RAEVLKLLQA GIIYPISDSP WVSPTQVVPK KSGITVVQNE KGEEVTTRLT
     SGWRVCIDYR KLNAVTRKDH FPLPFIDQVL ERVSGHPFYC FLDGYSGRMP FGLCNAPATF
     QRCMLSIFSD MVERIMEVFM DDITVYGGTF EECLVNLVDL AIPTR
//