ID A6D5W9_9VIBR Unreviewed; 289 AA.
AC A6D5W9;
DT 24-JUL-2007, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2007, sequence version 1.
DT 27-MAR-2024, entry version 51.
DE SubName: Full=Ribonuclease D {ECO:0000313|EMBL:EDL52045.1};
DE Flags: Fragment;
GN ORFNames=VSAK1_09083 {ECO:0000313|EMBL:EDL52045.1};
OS Vibrio mediterranei AK1.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC Vibrio.
OX NCBI_TaxID=391591 {ECO:0000313|EMBL:EDL52045.1, ECO:0000313|Proteomes:UP000003769};
RN [1] {ECO:0000313|EMBL:EDL52045.1, ECO:0000313|Proteomes:UP000003769}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AK1 {ECO:0000313|EMBL:EDL52045.1,
RC ECO:0000313|Proteomes:UP000003769};
RA Rosenberg E., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G.,
RA Rogers Y.-H., Friedman R., Frazier M., Venter J.C.;
RL Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EDL52045.1}.
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DR EMBL; ABCH01000040; EDL52045.1; -; Genomic_DNA.
DR RefSeq; WP_006074293.1; NZ_ABCH01000040.1.
DR AlphaFoldDB; A6D5W9; -.
DR Proteomes; UP000003769; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR GO; GO:0033890; F:ribonuclease D activity; IEA:InterPro.
DR GO; GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
DR CDD; cd06142; RNaseD_exo; 1.
DR Gene3D; 1.10.150.80; HRDC domain; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR010997; HRDC-like_sf.
DR InterPro; IPR002121; HRDC_dom.
DR InterPro; IPR044876; HRDC_dom_sf.
DR InterPro; IPR006292; RNase_D.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR NCBIfam; TIGR01388; rnd; 1.
DR PANTHER; PTHR47649; RIBONUCLEASE D; 1.
DR PANTHER; PTHR47649:SF1; RIBONUCLEASE D; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR Pfam; PF00570; HRDC; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SUPFAM; SSF47819; HRDC-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50967; HRDC; 1.
PE 4: Predicted;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022839};
KW Nuclease {ECO:0000256|ARBA:ARBA00022839};
KW tRNA processing {ECO:0000256|ARBA:ARBA00022694}.
FT DOMAIN 210..289
FT /note="HRDC"
FT /evidence="ECO:0000259|PROSITE:PS50967"
FT NON_TER 289
FT /evidence="ECO:0000313|EMBL:EDL52045.1"
SQ SEQUENCE 289 AA; 33153 MW; C04CED1460F3BD56 CRC64;
MEYQIVTELA ELESVCNKAR ESDVVMLDTE FVRIRTFYPK LGLIQLYDGE QLSLIDPLTI
SDFTPFIELL QDASVLKVLH ACGEDLEVFV NSFGCMPFPM VDTQIMAAFL GHGLSTGFAA
LVDEYLGVEL DKSESRADWV ARPLTDKQLD YAAADVYYLW PLYFKLFAQV EAKDWWDAAQ
QESDLLMQKR GKTPNPDSAY LDIKGVWQLK RKQLAILKPL ATWRMNEALK RDLALNFVIK
EQELWSIARF ALKKPKQMEE EGVDPRAIRR HGERIAAIVK RAQQTPEEE
//
