ID A6U7B2_SINMW Unreviewed; 768 AA.
AC A6U7B2;
DT 21-AUG-2007, integrated into UniProtKB/TrEMBL.
DT 21-AUG-2007, sequence version 1.
DT 27-MAR-2024, entry version 83.
DE SubName: Full=RNA binding S1 domain protein {ECO:0000313|EMBL:ABR59542.1};
GN OrderedLocusNames=Smed_0686 {ECO:0000313|EMBL:ABR59542.1};
OS Sinorhizobium medicae (strain WSM419) (Ensifer medicae).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
OX NCBI_TaxID=366394 {ECO:0000313|EMBL:ABR59542.1, ECO:0000313|Proteomes:UP000001108};
RN [1] {ECO:0000313|Proteomes:UP000001108}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=WSM419 {ECO:0000313|Proteomes:UP000001108};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E.,
RA Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G.,
RA Richardson P.;
RT "Complete sequence of Sinorhizobium medicae WSM419 chromosome.";
RL Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ABR59542.1, ECO:0000313|Proteomes:UP000001108}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=WSM419 {ECO:0000313|EMBL:ABR59542.1,
RC ECO:0000313|Proteomes:UP000001108};
RX PubMed=21304680; DOI=10.4056/sigs.43526;
RA Reeve W., Chain P., O'Hara G., Ardley J., Nandesena K., Brau L., Tiwari R.,
RA Malfatti S., Kiss H., Lapidus A., Copeland A., Nolan M., Land M.,
RA Hauser L., Chang Y.J., Ivanova N., Mavromatis K., Markowitz V.,
RA Kyrpides N., Gollagher M., Yates R., Dilworth M., Howieson J.;
RT "Complete genome sequence of the Medicago microsymbiont Ensifer
RT (Sinorhizobium) medicae strain WSM419.";
RL Stand. Genomic Sci. 2:77-86(2010).
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DR EMBL; CP000738; ABR59542.1; -; Genomic_DNA.
DR RefSeq; WP_011974888.1; NC_009636.1.
DR RefSeq; YP_001326377.1; NC_009636.1.
DR AlphaFoldDB; A6U7B2; -.
DR STRING; 366394.Smed_0686; -.
DR GeneID; 61609962; -.
DR KEGG; smd:Smed_0686; -.
DR PATRIC; fig|366394.8.peg.3789; -.
DR eggNOG; COG2183; Bacteria.
DR HOGENOM; CLU_009833_0_2_5; -.
DR OrthoDB; 9804714at2; -.
DR Proteomes; UP000001108; Chromosome.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR CDD; cd05685; S1_Tex; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR InterPro; IPR041692; HHH_9.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR010994; RuvA_2-like.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR044146; S1_Tex.
DR InterPro; IPR023323; Tex-like_dom_sf.
DR InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR InterPro; IPR018974; Tex-like_N.
DR InterPro; IPR032639; Tex_YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF12836; HHH_3; 1.
DR Pfam; PF17674; HHH_9; 1.
DR Pfam; PF00575; S1; 1.
DR Pfam; PF09371; Tex_N; 1.
DR Pfam; PF16921; Tex_YqgF; 1.
DR SMART; SM00316; S1; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR PROSITE; PS50126; S1; 1.
PE 4: Predicted;
FT DOMAIN 650..719
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT REGION 718..757
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 768 AA; 82463 MW; B69743D059137F88 CRC64;
MVTTARPIAA IIASEIKASA AQVAAAVELL DGGATVPFIA RYRKEATGGL DDTQLRVLSE
RLTYLRELEA RRASILDSIR SQDKMTDELE RKIEGAVTKA ELEDIYLPFK PKRRTKAEIA
RERGLGALAD AILSDRSTAP AERAAAFLTA DVPDAKAALD GARDIIAEGM TENAELLGQL
RSYMRGAAFL RARVVGGKQE SGAKFSDYFD HSERWATVPG HRALAMLRGW NEEVLSVDIV
VDEDAAPSHR PIERMIAAAY SVGDRLPGDK WLLEVIGWTW RVKLSLSLSL DLMRELRERA
EEEAIRVFAR NLKDLLLAAP AGSRPTMGLD PGIRTGVKVA IVDGTGKLLD TSTVYPFPPK
NDIRGTQAEL AALVRKHKVE LIAIGNGTGS RETEKLVADM LAAMPAPKPT KVIVSEAGAS
VYSASETAAA EFPGLDVSLR GAVSIARRLQ DPLAELVKIE PKSIGVGQYQ HDVDQSKLSR
SLDAVVEDAV NAVGVDLNTA SAPLLARVSG LGKSSAEAIV AHRDALGAFA SRKDLLKVPR
LGARTFEQCA GFLRITNGSE PLDASAVHPE AYGVAKKIVA ACGRDVRSLM GDSAELKKLD
PRIFVDERFG LPTVKDILAE LEKPGRDPRP SFKTATFAEG IDDIKDLKVG MRLEGTVTNV
AAFGAFVDIG VHQDGLVHVS QLADRFVKDP HEVVKAGDVV HVRVTEVDVA RKRIGLSMRK
EGGAETPREA RGTAPNGGNR GAPARPQPPQ QPAQGAFGEA LIAAMKKK
//
