UniProt: A8LT48

Database: UniProt
Entry: A8LT48_DINSH

LinkDB:  A8LT48_DINSH 
Original site:  A8LT48_DINSH

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Gene (3)   
   KEGG GENES (3)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   EMBL (3)   
Protein domain (4)   
   InterPro (2)   
   Pfam (2)   
Literature (1)   
   PubMed (1)   
All databases (12)   

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ID   A8LT48_DINSH            Unreviewed;       460 AA.
AC   A8LT48;
DT   04-DEC-2007, integrated into UniProtKB/TrEMBL.
DT   04-DEC-2007, sequence version 1.
DT   27-MAR-2024, entry version 65.
DE   SubName: Full=Transposase IS4 family protein {ECO:0000313|EMBL:ABV95415.1};
GN   OrderedLocusNames=Dshi_3682 {ECO:0000313|EMBL:ABV95415.1}, Dshi_3878
GN   {ECO:0000313|EMBL:ABV95606.1}, Dshi_4079
GN   {ECO:0000313|EMBL:ABV95801.1};
OS   Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).
OG   Plasmid pDSHI01 {ECO:0000313|EMBL:ABV95415.1,
OG   ECO:0000313|Proteomes:UP000006833},
OG   Plasmid pDSHI02 {ECO:0000313|EMBL:ABV95606.1,
OG   ECO:0000313|Proteomes:UP000006833}, and
OG   Plasmid pDSHI04 {ECO:0000313|EMBL:ABV95801.1,
OG   ECO:0000313|Proteomes:UP000006833}.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC   Roseobacteraceae; Dinoroseobacter.
OX   NCBI_TaxID=398580 {ECO:0000313|EMBL:ABV95415.1, ECO:0000313|Proteomes:UP000006833};
RN   [1] {ECO:0000313|EMBL:ABV95415.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=DFL 12 {ECO:0000313|EMBL:ABV95415.1};
RC   PLASMID=pDSHI01 {ECO:0000313|EMBL:ABV95415.1}, pDSHI02
RC   {ECO:0000313|EMBL:ABV95606.1}, and pDSHI04
RC   {ECO:0000313|EMBL:ABV95801.1};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E.,
RA   Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Detter J.C.,
RA   Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.,
RA   Kim E., Richardson P.;
RT   "Complete sequence of chromosome of Dinoroseobacter shibae DFL 12.";
RL   Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ABV95415.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=DFL 12 {ECO:0000313|EMBL:ABV95415.1};
RC   PLASMID=pDSHI01 {ECO:0000313|EMBL:ABV95415.1}, pDSHI02
RC   {ECO:0000313|EMBL:ABV95606.1}, and pDSHI04
RC   {ECO:0000313|EMBL:ABV95801.1};
RA   Liesegang H., Wagner-Doebler I.;
RT   "The Roseobacter - microalgae symbiosis: Adaptation to viral pressure,
RT   horizontal gene transfer, and ability to synthesize vitamine B12 under all
RT   conditions are revealed by the genome sequence.";
RL   Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|Proteomes:UP000006833}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 16493 / NCIMB 14021 / DFL 12
RC   {ECO:0000313|Proteomes:UP000006833};
RC   PLASMID=Plasmid pDSHI01 {ECO:0000313|Proteomes:UP000006833}, Plasmid
RC   pDSHI02 {ECO:0000313|Proteomes:UP000006833}, and Plasmid pDSHI04
RC   {ECO:0000313|Proteomes:UP000006833};
RX   PubMed=19741735; DOI=10.1038/ismej.2009.94;
RA   Wagner-Dobler I., Ballhausen B., Berger M., Brinkhoff T., Buchholz I.,
RA   Bunk B., Cypionka H., Daniel R., Drepper T., Gerdts G., Hahnke S., Han C.,
RA   Jahn D., Kalhoefer D., Kiss H., Klenk H.P., Kyrpides N., Liebl W.,
RA   Liesegang H., Meincke L., Pati A., Petersen J., Piekarski T.,
RA   Pommerenke C., Pradella S., Pukall R., Rabus R., Stackebrandt E., Thole S.,
RA   Thompson L., Tielen P., Tomasch J., von Jan M., Wanphrut N., Wichels A.,
RA   Zech H., Simon M.;
RT   "The complete genome sequence of the algal symbiont Dinoroseobacter shibae:
RT   a hitchhiker's guide to life in the sea.";
RL   ISME J. 4:61-77(2010).
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DR   EMBL; CP000831; ABV95415.1; -; Genomic_DNA.
DR   EMBL; CP000832; ABV95606.1; -; Genomic_DNA.
DR   EMBL; CP000834; ABV95801.1; -; Genomic_DNA.
DR   RefSeq; WP_012187121.1; NC_009958.1.
DR   AlphaFoldDB; A8LT48; -.
DR   KEGG; dsh:Dshi_3682; -.
DR   KEGG; dsh:Dshi_3878; -.
DR   KEGG; dsh:Dshi_4079; -.
DR   HOGENOM; CLU_021293_2_1_5; -.
DR   OrthoDB; 9774608at2; -.
DR   Proteomes; UP000006833; Plasmid pDSHI01.
DR   Proteomes; UP000006833; Plasmid pDSHI02.
DR   Proteomes; UP000006833; Plasmid pDSHI04.
DR   InterPro; IPR025668; Tnp_DDE_dom.
DR   InterPro; IPR008490; Transposase_InsH_N.
DR   PANTHER; PTHR33408:SF2; TNP_DDE_DOM DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR33408; TRANSPOSASE; 1.
DR   Pfam; PF13751; DDE_Tnp_1_6; 1.
DR   Pfam; PF05598; DUF772; 1.
PE   4: Predicted;
KW   Plasmid {ECO:0000313|EMBL:ABV95415.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000006833}.
FT   DOMAIN          52..127
FT                   /note="Transposase InsH N-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF05598"
FT   DOMAIN          324..449
FT                   /note="Transposase DDE"
FT                   /evidence="ECO:0000259|Pfam:PF13751"
SQ   SEQUENCE   460 AA;  52425 MW;  3B7B61C3CB8DB68E CRC64;
     MMGPRQEAQA ALFYEFSLEE HVPQDHLLRS IDRHLDLSSI RGHLADFYSH TGRPSVDPEL
     MIRMLLVGYC FGIRSERRLC EEVHLNLAYR WFCRLELTDR IPDHSTFSKN RHGRFRDSDL
     LRHVFEATVA RCIEEGLVGG QGFAVDASLI SADVQKQNSS NPEGWAAREI DPTDAPRAVR
     EYLDTLDDEA FGAATTAKPK FTAHADPASQ WTAARKGPAF FAYSDNYLID TDHGIIVDVD
     ASRSNKTAEV GAMRKMLDRT EDRFGVKPDW IAADTAYGSS DNLVWLALKR QILPFIPVFD
     KGERTDGTFS RSDFTWDDEN DRYICPSGKE MRHTWRTYSD PARNAPAWKA RRYRTRKSDC
     TGCALKAKCC PNSEVRAIHR EKYEIVRDFA RQCTASEYNP TAQRRRKKVE MLFAHLKRIL
     GLGRLRLRGP CGVQDEFTLA ATAQNLRKLA KLKPMVPATE
//

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