ID A8MR27_ARATH Unreviewed; 430 AA.
AC A8MR27;
DT 04-DEC-2007, integrated into UniProtKB/TrEMBL.
DT 04-DEC-2007, sequence version 1.
DT 27-MAR-2024, entry version 104.
DE SubName: Full=Polypyrimidine tract-binding protein 3 {ECO:0000313|EMBL:AEE31963.1};
GN Name=PTB3 {ECO:0000313|EMBL:AEE31963.1, ECO:0000313|TAIR:AT1G43190};
GN OrderedLocusNames=At1g43190 {ECO:0000313|Araport:AT1G43190,
GN ECO:0000313|EMBL:AEE31963.1};
GN ORFNames=F1I21.14 {ECO:0000313|EMBL:AEE31963.1}, F1I21_14
GN {ECO:0000313|EMBL:AEE31963.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AEE31963.1, ECO:0000313|Proteomes:UP000006548};
RN [1] {ECO:0000313|EMBL:AEE31963.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
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DR EMBL; CP002684; AEE31963.1; -; Genomic_DNA.
DR RefSeq; NP_001077673.1; NM_001084204.1.
DR AlphaFoldDB; A8MR27; -.
DR SMR; A8MR27; -.
DR EnsemblPlants; AT1G43190.3; AT1G43190.3; AT1G43190.
DR GeneID; 840918; -.
DR Gramene; AT1G43190.3; AT1G43190.3; AT1G43190.
DR Araport; AT1G43190; -.
DR TAIR; AT1G43190; PTB3.
DR OMA; AANNNAC; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; A8MR27; baseline and differential.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd12692; RRM2_PTBPH3; 1.
DR CDD; cd12698; RRM3_PTBPH3; 1.
DR CDD; cd12426; RRM4_PTBPH3; 1.
DR Gene3D; 3.30.70.330; -; 4.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR021790; PTBP1-like_RRM2.
DR InterPro; IPR034796; PTBPH3_RRM2.
DR InterPro; IPR034797; PTBPH3_RRM3.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR15592; MATRIN 3/NUCLEAR PROTEIN 220-RELATED; 1.
DR PANTHER; PTHR15592:SF18; SMOOTH, ISOFORM T; 1.
DR Pfam; PF00076; RRM_1; 2.
DR Pfam; PF13893; RRM_5; 1.
DR Pfam; PF11835; RRM_8; 1.
DR SMART; SM00360; RRM; 4.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 3.
DR PROSITE; PS50102; RRM; 3.
PE 1: Evidence at protein level;
KW Proteomics identification {ECO:0007829|PeptideAtlas:A8MR27,
KW ECO:0007829|ProteomicsDB:A8MR27};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}.
FT DOMAIN 6..78
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 243..317
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 353..427
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
SQ SEQUENCE 430 AA; 48020 MW; BE7B9CC05BAEC790 CRC64;
MAESSKVVHV RNVGHEISEN DLLQLFQPFG VITKLVMLRA KNQALLQMQD VSSAVSALQF
FTNVQPTIRN VYVQFSSHQE LTTIEQNIHG REDEPNRILL VTIHHMLYPI TVDVLHQVFS
PYGFVEKLVT FQKSAGFQAL IQYQVQQCAA SARTALQGRN IYDGCCQLDI QFSNLEELQV
NYNNDRSRDY TNPNLPAEQK GRSSHPCYGD TGVAYPQMAN TSAIAAAFGG GLPPGITGTN
DRCTVLVSNL NADSIDEDKL FNLFSLYGNI VRIKLLRNKP DHALVQMGDG FQAELAVHFL
KGAMLFGKRL EVNFSKHPNI TPGTDSHDYV NSNLNRFNRN AAKNYRYCCS PTKMIHLSTL
PQDVTEEEVM NHVQEHGAVV NTKVFEMNGK KQALVQFENE EEAAEALVCK HATSLGGSII
RISFSQLQTI
//
