ID A8W9N7_PINSY Unreviewed; 864 AA.
AC A8W9N7;
DT 15-JAN-2008, integrated into UniProtKB/TrEMBL.
DT 15-JAN-2008, sequence version 1.
DT 27-MAR-2024, entry version 62.
DE SubName: Full=Phytochrome P {ECO:0000313|EMBL:ABW33491.1};
DE Flags: Fragment;
GN Name=PHYP {ECO:0000313|EMBL:ABW33491.1};
OS Pinus sylvestris (Scotch pine).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Pinopsida; Pinidae; Conifers I; Pinales; Pinaceae; Pinus;
OC Pinus subgen. Pinus.
OX NCBI_TaxID=3349 {ECO:0000313|EMBL:ABW33491.1};
RN [1] {ECO:0000313|EMBL:ABW33491.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=PL5 {ECO:0000313|EMBL:ABW33491.1};
RX PubMed=12694283; DOI=10.1046/j.1365-294X.2003.01826.x;
RA Garcia-Gil M.R., Mikkonen M., Savolainen O.;
RT "Nucleotide diversity at two phytochrome loci along a latitudinal cline in
RT Pinus sylvestris.";
RL Mol. Ecol. 12:1195-1206(2003).
RN [2] {ECO:0000313|EMBL:ABW33491.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=PL5 {ECO:0000313|EMBL:ABW33491.1};
RA Garcia-Gil M.R., Mikkonen M., Savolainen O.;
RL Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235}.
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DR EMBL; EU203171; ABW33491.1; -; Genomic_DNA.
DR AlphaFoldDB; A8W9N7; -.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 178..347
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 572..643
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 706..758
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:ABW33491.1"
FT NON_TER 864
FT /evidence="ECO:0000313|EMBL:ABW33491.1"
SQ SEQUENCE 864 AA; 95805 MW; E72760805982B864 CRC64;
GESGKSFDYT RSIKSTTESV PEQQITAYLS RIQRGGRIQP FGCVLAVEET TFRIIAYSEN
AVEMLDLAPQ SVPSMEKPQQ DVLTIGTDVR TLFTAASAHS LEKAAVAQEI SLMNPIWVHC
KNSRKPFYAI VHRIDVGMVI DLEPLRTGDA FMSAAGAVQS QKLAVRAISR LQSLPCGDVG
LLCDTVVENV RELTGYDRVM VYKFHEDEHG EVVAEIRRSD LEPYLGLHYP ATDIPQASRF
LFMQNRVRMI CDCMATPVKV IQSEELMQPL CLVGSTLRAP HGCHAQYMAN MGSIASLVMA
VIINGNDDEG GGSGRNSMKL WGLVVCHHTS PRAVPFPLRY ACEFLMQALG LQLNMELQLA
AQLTEKHILR TQTLLCDMLL RDAPMGIVTQ SPSIKDLVKC DGAALYYGGM CWLLGVTPTE
AQIKDIADWL LEHHGDSTGL STDSLADAGY PGAASLGDAV CGMASARITS KDFLFWFRSH
TAKEMKWGGA KHHPDDKDDA RRMHPRSSFK AFLEVVKRRS LPWDNVEIDA IHSLQLILRG
SFRDIDDSGT KTMVHSRLND LRLQGIDELS SVASEMVRLI ETATAPILAV DYNGLVNGWN
AKVAELTGLP VGEAMGMSLV QDLVFEQSVE RVEKMLHNAL RGEEEKNVEM MLKTFGPQKE
KEAVILVVNA CSSRDFTDNI VGVCFVGQDV TSQKVVMDKF IRIQGDYRSI VQSPNPLIPP
IFASDEYACC SEWNAAMEKV TGWTHDEVIG KMLVGEIFGG CCRLKGQDAV TKFTIVLHSA
IDGQEIEKFP FAFFDKQGKY VEALLTANKR TDADGRITGS FCFLQIASSE LQHALEVQRQ
QEKKCFARLK ELAYIRQEIK NPLY
//
