ID B1R8U7_CLOPF Unreviewed; 739 AA.
AC B1R8U7;
DT 20-MAY-2008, integrated into UniProtKB/TrEMBL.
DT 20-MAY-2008, sequence version 1.
DT 24-JAN-2024, entry version 39.
DE SubName: Full=Stage V sporulation protein D {ECO:0000313|EMBL:EDT23323.1};
GN Name=spoVD {ECO:0000313|EMBL:EDT23323.1};
GN ORFNames=AC1_2351 {ECO:0000313|EMBL:EDT23323.1};
OS Clostridium perfringens B str. ATCC 3626.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae;
OC Clostridium.
OX NCBI_TaxID=451754 {ECO:0000313|EMBL:EDT23323.1, ECO:0000313|Proteomes:UP000004342};
RN [1] {ECO:0000313|EMBL:EDT23323.1, ECO:0000313|Proteomes:UP000004342}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=B str. ATCC 3626 {ECO:0000313|Proteomes:UP000004342};
RA Paulsen I., Sebastian Y.;
RT "Annotation of Clostridium perfringens B str. ATCC 3626.";
RL Submitted (JUL-2007) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the transpeptidase family.
CC {ECO:0000256|ARBA:ARBA00007171}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EDT23323.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; ABDV01000019; EDT23323.1; -; Genomic_DNA.
DR AlphaFoldDB; B1R8U7; -.
DR Proteomes; UP000004342; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0008658; F:penicillin binding; IEA:InterPro.
DR CDD; cd06576; PASTA_Pbp2x-like_1; 1.
DR CDD; cd06575; PASTA_Pbp2x-like_2; 1.
DR Gene3D; 3.30.10.20; -; 1.
DR Gene3D; 3.30.450.330; -; 1.
DR Gene3D; 3.40.710.10; DD-peptidase/beta-lactamase superfamily; 1.
DR Gene3D; 3.90.1310.10; Penicillin-binding protein 2a (Domain 2); 1.
DR InterPro; IPR012338; Beta-lactam/transpept-like.
DR InterPro; IPR005543; PASTA_dom.
DR InterPro; IPR005311; PBP_dimer.
DR InterPro; IPR036138; PBP_dimer_sf.
DR InterPro; IPR001460; PCN-bd_Tpept.
DR InterPro; IPR011927; SpoVD_pbp.
DR NCBIfam; TIGR02214; spoVD_pbp; 1.
DR PANTHER; PTHR30627; PEPTIDOGLYCAN D,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30627:SF1; PEPTIDOGLYCAN D,D-TRANSPEPTIDASE FTSI; 1.
DR Pfam; PF03793; PASTA; 2.
DR Pfam; PF03717; PBP_dimer; 1.
DR Pfam; PF00905; Transpeptidase; 1.
DR SMART; SM00740; PASTA; 2.
DR SUPFAM; SSF56601; beta-lactamase/transpeptidase-like; 1.
DR SUPFAM; SSF56519; Penicillin binding protein dimerisation domain; 1.
DR SUPFAM; SSF54184; Penicillin-binding protein 2x (pbp-2x), c-terminal domain; 2.
DR PROSITE; PS51178; PASTA; 2.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}.
FT TRANSMEM 23..46
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 617..675
FT /note="PASTA"
FT /evidence="ECO:0000259|PROSITE:PS51178"
FT DOMAIN 680..738
FT /note="PASTA"
FT /evidence="ECO:0000259|PROSITE:PS51178"
SQ SEQUENCE 739 AA; 81206 MW; 2A561DA06BB1073E CRC64;
MKKKKNKGFK DYKITKSLRF GRTYWTMIVV WGLLGVLTLR LSYVMIFKHK EYGSMAEEQW
KNEIKIGAKR GEILDRNGAQ LAVSANVYRV DLDLKTLRED TFTKDDTDDT KKEKLNKIAG
ELGTALDMPK EEVYDKINST LPSGLPATSV TLIRKIEKDK ADSAKNLKIR GVIVSQDTKR
YYPDNNFLAQ VLGRVDADGI GQGGIEREYN VELSGLPGMR ISEVARNSSG IPYSNSEFAK
PVDGKDVTLT VDETIQYFAE KVAEEGKKEY KADGVSIIVM NPKNGEILAM ANKPDYNPNE
PYKGYENFPG KDKTEKMENM WKNDAVSNSF EPGSIFKMVT SSAAVQEGIA GGNETYFCPG
GKNVSGTYIK CWKPDGHGTE TFDQILENSC NVGFMDIGQK LGKEKLNEYI EKFGFGKQTG
IDLPGETTGI VLPNDKIGPV ELATISFGQT DSASSVQMMA AMNTIANGGT WIQPHIMKEI
SHEDPSGARV VDKTFVPKKI DNIIDQKTAM RVSEALEKTV HFGSPKRAYI EGYGIAGKTG
TAEKVKASGG YGAGYVASFA GFAPYNDPQV SVLISVDNPK GEYFGGLVAA PLAHDLFSDI
FNYMELDSSK IDKNKSKEEI LPEVRGMSLD KAKAILDKDN IKYSVEDGGN SVVDMNPKPG
YTIKEGDEIK LYTKTTSNYN KDVVVPDFNG LSMEKAKEIL NKIGLKGTFA GEGVIKEQSV
AQGDVVKSGT SIEFKLDKK
//
