ID B3SUB6_SALSA Unreviewed; 236 AA.
AC B3SUB6;
DT 02-SEP-2008, integrated into UniProtKB/TrEMBL.
DT 02-SEP-2008, sequence version 1.
DT 27-MAR-2024, entry version 85.
DE SubName: Full=Homeobox protein HoxD4ab {ECO:0000313|EMBL:ABV82033.1, ECO:0000313|RefSeq:NP_001133031.1};
GN Name=HoxD4ab {ECO:0000313|EMBL:ABV82033.1};
GN Synonyms=hoxd4ab {ECO:0000313|RefSeq:NP_001133031.1};
OS Salmo salar (Atlantic salmon).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC Salmonidae; Salmoninae; Salmo.
OX NCBI_TaxID=8030 {ECO:0000313|EMBL:ABV82033.1};
RN [1] {ECO:0000313|EMBL:ABV82033.1, ECO:0000313|RefSeq:NP_001133031.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=18424774; DOI=10.1093/molbev/msn097;
RA Mungpakdee S., Seo H.C., Angotzi A.R., Dong X., Akalin A., Chourrout D.;
RT "Differential evolution of the 13 Atlantic salmon Hox clusters.";
RL Mol. Biol. Evol. 25:1333-1343(2008).
RN [2] {ECO:0000313|RefSeq:NP_001133031.1}
RP IDENTIFICATION.
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- FUNCTION: Sequence-specific transcription factor which is part of a
CC developmental regulatory system that provides cells with specific
CC positional identities on the anterior-posterior axis.
CC {ECO:0000256|ARBA:ARBA00003263}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PROSITE-ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
CC -!- SIMILARITY: Belongs to the Antp homeobox family.
CC {ECO:0000256|RuleBase:RU004442}.
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DR EMBL; EF695298; ABV82033.1; -; mRNA.
DR EMBL; EU025719; ABW77564.1; -; Genomic_DNA.
DR RefSeq; NP_001133031.1; NM_001139559.1.
DR STRING; 8030.ENSSSAP00000095873; -.
DR PaxDb; 8030-ENSSSAP00000095873; -.
DR Ensembl; ENSSSAT00000130229; ENSSSAP00000095873; ENSSSAG00000072913.
DR GeneID; 100194467; -.
DR KEGG; sasa:100194467; -.
DR CTD; 100194467; -.
DR OMA; PNTKGRA; -.
DR OrthoDB; 728401at2759; -.
DR Proteomes; UP000087266; Chromosome ssa21.
DR Bgee; ENSSSAG00000072913; Expressed in pharyngeal gill and 3 other cell types or tissues.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017995; Homeobox_antennapedia.
DR InterPro; IPR001827; Homeobox_Antennapedia_CS.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR020479; Homeobox_metazoa.
DR PANTHER; PTHR45771:SF5; HOMEOBOX PROTEIN HOX-D4; 1.
DR PANTHER; PTHR45771; HOMEOTIC PROTEIN DEFORMED; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR PRINTS; PR00025; ANTENNAPEDIA.
DR PRINTS; PR00024; HOMEOBOX.
DR SMART; SM00389; HOX; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS00032; ANTENNAPEDIA; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU00108};
KW Homeobox {ECO:0000256|ARBA:ARBA00023155, ECO:0000256|PROSITE-
KW ProRule:PRU00108};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW ProRule:PRU00108}; Reference proteome {ECO:0000313|Proteomes:UP000087266};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 144..204
FT /note="Homeobox"
FT /evidence="ECO:0000259|PROSITE:PS50071"
FT DNA_BIND 146..205
FT /note="Homeobox"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00108"
FT REGION 65..93
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 204..236
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 213..236
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 236 AA; 27281 MW; B1439466CF09757A CRC64;
MAMSSYMLNS KYVDPQFPPC EEYSQNSYIH EQGRDYYGPS QDPDLQHPGI YPRSNYPEQP
FSCTTVQGST VQPRGHVQGR DSNPSTFTAQ TEPCAPVQVT GPRTCGQQQN TKNQNGIQAK
QPAVVYPWMK KHHVTTVNPD YTGPEPKRSR TAYTRQQVLE LEKEFHFNRY LTRRRRIEIA
HTLVLSERQI KIWFQNRRMK WKKDHKLPNT KGRAASASGQ HLPSIQKDNQ TDVTTF
//