ID B4F9M6_MAIZE Unreviewed; 690 AA.
AC B4F9M6;
DT 23-SEP-2008, integrated into UniProtKB/TrEMBL.
DT 23-SEP-2008, sequence version 1.
DT 24-JAN-2024, entry version 88.
DE SubName: Full=KH domain-containing protein {ECO:0000313|EMBL:AQK70489.1};
GN Name=100191655 {ECO:0000313|EnsemblPlants:Zm00001eb239890_P001};
GN ORFNames=ZEAMMB73_Zm00001d016326 {ECO:0000313|EMBL:AQK70489.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF78819.1};
RN [1] {ECO:0000313|EMBL:ACF78819.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=B73 {ECO:0000313|EMBL:ACF78819.1};
RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740;
RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J.,
RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J.,
RA Walbot V., Yu Y.;
RT "Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.";
RL PLoS Genet. 5:E1000740-E1000740(2009).
RN [2] {ECO:0000313|EnsemblPlants:Zm00001eb239890_P001, ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb239890_P001,
RC ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., Abbott R.M.,
RA Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., Gillam B.,
RA Chen W., Yan L., Higginbotham J., Cardenas M., Waligorski J., Applebaum E.,
RA Phelps L., Falcone J., Kanchi K., Thane T., Scimone A., Thane N., Henke J.,
RA Wang T., Ruppert J., Shah N., Rotter K., Hodges J., Ingenthron E.,
RA Cordes M., Kohlberg S., Sgro J., Delgado B., Mead K., Chinwalla A.,
RA Leonard S., Crouse K., Collura K., Kudrna D., Currie J., He R.,
RA Angelova A., Rajasekar S., Mueller T., Lomeli R., Scara G., Ko A.,
RA Delaney K., Wissotski M., Lopez G., Campos D., Braidotti M., Ashley E.,
RA Golser W., Kim H., Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A.,
RA Fan C., Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., Jeddeloh J.A.,
RA Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., Nagel D.H., McCann M.C.,
RA SanMiguel P., Myers A.M., Nettleton D., Nguyen J., Penning B.W.,
RA Ponnala L., Schneider K.L., Schwartz D.C., Sharma A., Soderlund C.,
RA Springer N.M., Sun Q., Wang H., Waterman M., Westerman R., Wolfgruber T.K.,
RA Yang L., Yu Y., Zhang L., Zhou S., Zhu Q., Bennetzen J.L., Dawe R.K.,
RA Jiang J., Jiang N., Presting G.G., Wessler S.R., Aluru S.,
RA Martienssen R.A., Clifton S.W., McCombie W.R., Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [3] {ECO:0000313|EMBL:AQK70489.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQK70489.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EnsemblPlants:Zm00001eb239890_P001}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb239890_P001};
RG EnsemblPlants;
RL Submitted (MAY-2021) to UniProtKB.
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DR EMBL; BT033814; ACF78819.1; -; mRNA.
DR EMBL; BT060986; ACN25683.1; -; mRNA.
DR EMBL; CM000781; AQK70489.1; -; Genomic_DNA.
DR RefSeq; NP_001130556.1; NM_001137084.1.
DR RefSeq; XP_008680977.1; XM_008682755.1.
DR AlphaFoldDB; B4F9M6; -.
DR SMR; B4F9M6; -.
DR IntAct; B4F9M6; 3.
DR STRING; 4577.B4F9M6; -.
DR iPTMnet; B4F9M6; -.
DR PaxDb; 4577-GRMZM2G177781_P02; -.
DR EnsemblPlants; Zm00001eb239890_T001; Zm00001eb239890_P001; Zm00001eb239890.
DR EnsemblPlants; Zm00001eb239890_T002; Zm00001eb239890_P002; Zm00001eb239890.
DR GeneID; 100191655; -.
DR Gramene; Zm00001eb239890_T001; Zm00001eb239890_P001; Zm00001eb239890.
DR Gramene; Zm00001eb239890_T002; Zm00001eb239890_P002; Zm00001eb239890.
DR KEGG; zma:100191655; -.
DR eggNOG; KOG1676; Eukaryota.
DR HOGENOM; CLU_020507_2_0_1; -.
DR InParanoid; B4F9M6; -.
DR OMA; RVRNPGM; -.
DR OrthoDB; 1662at2759; -.
DR Proteomes; UP000007305; Chromosome 5.
DR ExpressionAtlas; B4F9M6; baseline and differential.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR CDD; cd00105; KH-I; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 2.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR PANTHER; PTHR10288; KH DOMAIN CONTAINING RNA BINDING PROTEIN; 1.
DR PANTHER; PTHR10288:SF171; P-ELEMENT SOMATIC INHIBITOR, ISOFORM C; 1.
DR Pfam; PF00013; KH_1; 2.
DR SMART; SM00322; KH; 2.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 2.
DR PROSITE; PS50084; KH_TYPE_1; 2.
PE 1: Evidence at protein level;
KW Proteomics identification {ECO:0007829|PeptideAtlas:B4F9M6};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00117}.
FT DOMAIN 140..213
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 235..309
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT REGION 1..100
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 114..145
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 310..690
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..17
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 21..36
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 122..140
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 310..330
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 368..540
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 625..657
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 690 AA; 70155 MW; A68ABDD31BC1D75D CRC64;
MADDHYSSKR KYDDPSPPPR RTGFSSGPPP ASPPAGGAPS YNSVAPPPDE IQLAKQRAQE
IAARIFNAAE AKRPRVDNGD DDVGGFGGGS SLGGSGGGGG GRIGGAGLGF SSSAGGGHGA
SIPPLSSQSS APQYSYGGHQ GTSKKIEIPN GRVGVIIGKA GETIRYIQLQ SGAKIQVTRD
HEAEPGALTR QVELSGNPEQ ISKAEQLIKE VIAEADAGSS GAVSGGRKYN APQPGAETFQ
MKIANNKVGL IIGKGGETIK SMQAKSGARI QVIPLHLPAG DTSTERTVHI DGTQEQIEHA
KQLVAEVTSE NRARNPMSGG YSQQGYHPPR PQSNWGPPSA PPQQSGYGYM QPGAYPGAPP
QYGAPQQPYG SYPPTSGGYQ TGWDQSQNQQ SHTTPPGTGY DYYSQQQQPQ QQQSAPGTAA
STDATSYNYG QPSTYASQGY DSTYTQHSGG QQAYGHDGYS GYQTQGQQQG YSQQTGYDQQ
GYGASAYGSA ANSTQDGSSY GGPGGATQAS PGQQTSTPAA GSHPGYASQP PTSAAASYPV
QGSAPSGYGA PPPQPGYGTQ PPQQGGYGPG AYGQPSPHGE KPPASSPYGQ APPPGSAQGG
YVQYGYSQPA YGAPPAYPGA PTASHPGYGQ QQSYGDAYGS GSYGQPTAYT TEAAAPAASQ
DHSAAPAAAP GTTAAPAPDN NGGAKTSAET
//
