ID B4YF15_ANACO Unreviewed; 953 AA.
AC B4YF15;
DT 23-SEP-2008, integrated into UniProtKB/TrEMBL.
DT 23-SEP-2008, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE RecName: Full=RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00012493};
DE EC=2.7.7.49 {ECO:0000256|ARBA:ARBA00012493};
DE Flags: Fragment;
OS Ananas comosus (Pineapple) (Ananas ananas).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Bromeliaceae;
OC Bromelioideae; Ananas.
OX NCBI_TaxID=4615 {ECO:0000313|EMBL:ACB28472.1};
RN [1] {ECO:0000313|EMBL:ACB28472.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=18607672; DOI=10.1007/s00705-008-0160-4;
RA Gambley C.F., Geering A.D., Steele V., Thomas J.E.;
RT "Identification of viral and non-viral reverse transcribing elements in
RT pineapple (Ananas comosus), including members of two new badnavirus
RT species.";
RL Arch. Virol. 153:1599-1604(2008).
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DR EMBL; EU522675; ACB28472.1; -; Genomic_DNA.
DR AlphaFoldDB; B4YF15; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.10.20.370; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041373; RT_RNaseH.
DR PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17917; RT_RNaseH; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF08284; RVP_2; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SUPFAM; SSF50630; Acid proteases; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
FT DOMAIN 253..432
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 767..931
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:ACB28472.1"
FT NON_TER 953
FT /evidence="ECO:0000313|EMBL:ACB28472.1"
SQ SEQUENCE 953 AA; 108574 MW; CED628B0EECEE5F7 CRC64;
AGQAQLPDYR TMRLCGTVKN RRIHILIDSG STHNFLDAAV AAKLGCCAEN IPAVNVTVAD
GNKLISSSTC RAFKWKMQGL EFKANLLLLP LRGCDMVLGV QWLKQLGPIL WDFSKLRMEF
QFQGQKIVLR GSSGPSLKII EGKQLKKMVL DDTALSAVHL CSIHATPQEG NHIATSEDAE
TTWSGLGKAY SQQLQLLLEE HSDLFEEPQG LPPVRLHDHK IPLKEGTNPI NVRPYRYPAY
QKTEIEKLVQ EMLSQGVITP SNSPYSSPVV LVKKKDGSWR LCIDYRSLND STIKDKFPIP
LVDELLDELS GAKLFSELDL RSGYHQIRMH ADDISKTAFR THEGHYEFLV MPFGLTNAPS
TFQGLMNHIF KPYLRRFILV FFDDILVYSK GVEEHLCHLR TTFQVLRQHS LFVRRKKCIF
AAVQLEYLGH VISHEGVSMD KKKVEAIQEW PLPTTAKELR GFLGLAGYYR RFVKDFGKIS
KSLHEMLGKE GFKWTNERHY AFQQLKKAVS AAPVLALPDF TIDFTIETDA SGIGVGAVLL
QKGRPIAFMS KPLSPRNRQL STYEREMLAI VIAVQKWRPY LIGRHFKIKT DHQSLKYLME
QRVSTPSQQK WVAKLMGYDY ELIYKKGQEN VVADALSRSP TLLAVSAIHT DLLDQIKWSW
NVDDKLKKII QQKQSDINSW PRYTWVQDQL RRKGKLVVGS DPGLKLQLIH NFHASSIGGH
SGMEATTRKL KGQFYWKGLR RDVEQFVREC SVCQQNKYET TAPAGLLQPL PIPEGIWTEI
SMDFIEGLPN SQGKEVIMVV VDRLSKYAHF IALSHPYTAS SVAQLFLDNI YKLHGMPRSI
VSDRDTIFVS QFWQELFKRL QVKVNLSTAY HPQSDGQTEV VNRCLENYLR CMAGERPKEW
AKWLPLAEWW YNTSYHSSTK ATPYEVVYGQ PPPLHVPYLA GDSLMEAVDR TLA
//
