ID B5YNJ1_THAPS Unreviewed; 1365 AA.
AC B5YNJ1;
DT 25-NOV-2008, integrated into UniProtKB/TrEMBL.
DT 25-NOV-2008, sequence version 1.
DT 27-MAR-2024, entry version 66.
DE RecName: Full=Chromo domain-containing protein {ECO:0000259|PROSITE:PS50013};
GN ORFNames=THAPS_23560 {ECO:0000313|EMBL:ACI64638.1};
OS Thalassiosira pseudonana (Marine diatom) (Cyclotella nana).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales;
OC Thalassiosiraceae; Thalassiosira.
OX NCBI_TaxID=35128 {ECO:0000313|EMBL:ACI64638.1, ECO:0000313|Proteomes:UP000001449};
RN [1] {ECO:0000313|EMBL:ACI64638.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:ACI64638.1};
RX PubMed=15459382; DOI=10.1126/science.1101156;
RA Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D.,
RA Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A.,
RA Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C.,
RA Glavina T., Goodstein D., Hadi M.Z., Hellsten U., Hildebrand M.,
RA Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W.,
RA Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M.,
RA Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A.,
RA Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A.,
RA Wilkerson F.P., Rokhsar D.S.;
RT "The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and
RT metabolism.";
RL Science 306:79-86(2004).
RN [2] {ECO:0000313|EMBL:ACI64638.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:ACI64638.1};
RX PubMed=18923393; DOI=10.1038/nature07410;
RA Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A.,
RA Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A.,
RA Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.,
RA Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P.,
RA Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C.,
RA Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D.,
RA Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G.,
RA La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J.,
RA Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A.,
RA Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L.,
RA Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A.,
RA Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R.,
RA Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S.,
RA Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y.,
RA Grigoriev I.V.;
RT "The Phaeodactylum genome reveals the evolutionary history of diatom
RT genomes.";
RL Nature 456:239-244(2008).
RN [3] {ECO:0000313|EMBL:ACI64638.1, ECO:0000313|Proteomes:UP000001449}
RP GENOME REANNOTATION.
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:ACI64638.1};
RG Diatom Consortium;
RA Grigoriev I., Grimwood J., Kuo A., Otillar R.P., Salamov A., Detter J.C.,
RA Schmutz J., Lindquist E., Shapiro H., Lucas S., Glavina del Rio T.,
RA Bruce D., Pitluck S., Rokhsar D., Armbrust V.;
RL Submitted (SEP-2008) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP001160; ACI64638.1; -; Genomic_DNA.
DR RefSeq; XP_002295921.1; XM_002295885.1.
DR STRING; 35128.B5YNJ1; -.
DR PaxDb; 35128-Thaps23560; -.
DR EnsemblProtists; ACI64638; ACI64638; THAPS_23560.
DR GeneID; 7450694; -.
DR KEGG; tps:THAPS_23560; -.
DR eggNOG; KOG1911; Eukaryota.
DR HOGENOM; CLU_256751_0_0_1; -.
DR InParanoid; B5YNJ1; -.
DR Proteomes; UP000001449; Chromosome 7.
DR GO; GO:0005721; C:pericentric heterochromatin; IBA:GO_Central.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0035064; F:methylated histone binding; IBA:GO_Central.
DR GO; GO:0006325; P:chromatin organization; IBA:GO_Central.
DR GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00024; CD_CSD; 3.
DR Gene3D; 2.40.50.40; -; 3.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR023780; Chromo_domain.
DR InterPro; IPR023779; Chromodomain_CS.
DR PANTHER; PTHR22812; CHROMOBOX PROTEIN; 1.
DR PANTHER; PTHR22812:SF157; CHROMOBOX PROTEIN HOMOLOG 1; 1.
DR Pfam; PF00385; Chromo; 3.
DR SMART; SM00298; CHROMO; 3.
DR SUPFAM; SSF54160; Chromo domain-like; 3.
DR PROSITE; PS00598; CHROMO_1; 1.
DR PROSITE; PS50013; CHROMO_2; 3.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000001449}.
FT DOMAIN 63..122
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT DOMAIN 770..829
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT DOMAIN 1194..1253
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT REGION 1..59
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 202..359
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 412..445
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 506..558
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 736..762
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 940..990
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1021..1047
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1082..1184
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1329..1365
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..40
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 218..245
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 270..359
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 412..440
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 738..762
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 940..958
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 959..976
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1169..1183
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1365 AA; 150730 MW; B3F30DC8369D8548 CRC64;
MPTGSRQTMS STSTSTSATS TKQPQQQSVP SRSGNKRRRT STSSISKHKK RKNNNAQAKE
ELFQVEKIVG SKVDKSGMTL FKTRWKGYTA ADDTWEPLQN VAETGHVDRY LRSLRLKHLT
PTQPGVATIQ YDDGELSMVD LKQEQFRKFV VGGVYDSSNE GSVNDWGIVR EGATIELFWP
NADLWFECTV VKFCPLLGST VDGDGDENKK KKKKKRKSVD EKVDEKGRED RSEEKAQDET
TKDASKDTLA PSPSSVDAAA RDKKPAAVQE TKQTACSSGP VIDDATTTSD AKPAAATTMQ
GQSKSSAAST ATTPPASETA NVASTKVAVA SKATSASSAA KTVPDATNTS VSSASSTAAT
PKHLKLEIIA SILQNLKKSV APEEIKEDDE SDELAIPYQK GGNVVTKRPN TFAQKPAAAP
TKSTTSASAA SSNADTSEVK RGAQLRTAKA AVVKRFGQMC ADKRRECNRL PHNYVVKLTE
ENKAKYPFLT RGSINTAMQK ILNTENYKEE SKQQQEEEEE GKEEVLDGPT EVPNEATTQI
NAAAAPADGR DDDDDASERT PEIVIMSLPT PLGKDIVDAI TVRYLFEKER AFGALPEGRF
YDIIEDTKKD FGAEHLIIIP TTIINHHHHG GCFYVNGSEP SLFHVLDASL LKRMDSIAAK
NNITTARGLA LAHSLLEEIG MVNKVALYKV KAGFDVNPDG TNKSDGKILG IPWYYSFLRR
NAKHFSHYEL WPHPKQTGGS THEKEPFSKE IKISRPKSSD DIEKTGDDEF LVEKIVDSKV
NRNGVTLYKV RWMGFTPEDD TFEPAENLAS TGHIDRYTRN ERLRYLSRHY PGAALVEYSD
GERQLVDMTK ETFRAYIEGD GSGRTEDDPD VNDFSLIKEG AKLELLWPYA KIYFGAKVLL
WTPLEEDKRS QKKEVVQRPQ VKPQGKILLM AKMAAAKSPA QVSDVTSLVS TASPATEVRG
KSTEKDVKDK PAPSGGESNS KKRGDSIALP SVEVKHKARR KIEVRNLHGV HAASRSEASN
FALCEKTSPP PAETSSSPPD IGEISPSDNS WVAERLLGKG SGLQKVISKD IDEFFLDSDE
EDEASELGLD PELVGHGLPL FDDSDDSTEK KTPAMLTSPG IRDNNTPQKK KKRKTKKQLA
LDYSDVSVLD VDGGGKPRAQ PKTKDPSKHK PPVAKRKQHE IKRPKRAVVK EEVFMVESIL
DCKVDKNGST VYKVRWKGYD EHHDSWEPTA HVSETGHVDM FHRRQKEQSL IKDTPGVAVI
QYTDGEKCIV DLKKEVFRLH MDGVYDSSNN WSVNNFRIIC PGATIELLWK HAGLYFVCKV
ISWTPLQRKE EKEIKQPKSG EDVANSATPR KDSAKPLGEE EEKQQ
//
