ID B7G1H5_PHATC Unreviewed; 687 AA.
AC B7G1H5;
DT 10-FEB-2009, integrated into UniProtKB/TrEMBL.
DT 10-FEB-2009, sequence version 1.
DT 27-MAR-2024, entry version 60.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=PHATRDRAFT_20857 {ECO:0000313|EMBL:EEC47682.1};
OS Phaeodactylum tricornutum (strain CCAP 1055/1).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae;
OC Phaeodactylum.
OX NCBI_TaxID=556484 {ECO:0000313|EMBL:EEC47682.1, ECO:0000313|Proteomes:UP000000759};
RN [1] {ECO:0000313|EMBL:EEC47682.1, ECO:0000313|Proteomes:UP000000759}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCAP 1055/1 {ECO:0000313|EMBL:EEC47682.1,
RC ECO:0000313|Proteomes:UP000000759};
RX PubMed=18923393; DOI=10.1038/nature07410;
RA Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A.,
RA Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A.,
RA Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.,
RA Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P.,
RA Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C.,
RA Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D.,
RA Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G.,
RA La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J.,
RA Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A.,
RA Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L.,
RA Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A.,
RA Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R.,
RA Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S.,
RA Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y.,
RA Grigoriev I.V.;
RT "The Phaeodactylum genome reveals the evolutionary history of diatom
RT genomes.";
RL Nature 456:239-244(2008).
RN [2] {ECO:0000313|Proteomes:UP000000759}
RP GENOME REANNOTATION.
RC STRAIN=CCAP 1055/1 {ECO:0000313|Proteomes:UP000000759};
RG Diatom Consortium;
RA Grigoriev I., Grimwood J., Kuo A., Otillar R.P., Salamov A., Detter J.C.,
RA Lindquist E., Shapiro H., Lucas S., Glavina del Rio T., Pitluck S.,
RA Rokhsar D., Bowler C.;
RL Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000613; EEC47682.1; -; Genomic_DNA.
DR RefSeq; XP_002181030.1; XM_002180994.1.
DR AlphaFoldDB; B7G1H5; -.
DR STRING; 556484.B7G1H5; -.
DR PaxDb; 2850-Phatr20857; -.
DR GeneID; 7201595; -.
DR KEGG; pti:PHATRDRAFT_20857; -.
DR eggNOG; KOG0147; Eukaryota.
DR HOGENOM; CLU_389575_0_0_1; -.
DR InParanoid; B7G1H5; -.
DR OrthoDB; 5480707at2759; -.
DR Proteomes; UP000000759; Chromosome 10.
DR GO; GO:0005634; C:nucleus; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006397; P:mRNA processing; IEA:InterPro.
DR CDD; cd12285; RRM3_RBM39_like; 1.
DR Gene3D; 3.30.70.330; -; 3.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR006509; RBM39_SF.
DR InterPro; IPR000504; RRM_dom.
DR NCBIfam; TIGR01622; SF-CC1; 1.
DR PANTHER; PTHR48036:SF6; RNA BINDING MOTIF PROTEIN 39B ISOFORM X1-RELATED; 1.
DR PANTHER; PTHR48036; SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED; 1.
DR Pfam; PF00076; RRM_1; 2.
DR SMART; SM00360; RRM; 3.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR PROSITE; PS50102; RRM; 3.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000759};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 287..367
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 405..483
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 596..680
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..280
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 10..70
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 71..91
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 92..119
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 120..134
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 167..181
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 187..209
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 216..235
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 236..260
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 687 AA; 75540 MW; BD8ECB56E8B4412C CRC64;
MPSPSPEKSR SGQTEEERLR EVLRAKRKSR RESKGDNGDR DAQHDTDRTK SQSPSEKIKS
TDRESARSPE NLDRSQPANS NGHAEPQSNT QRSRSPDHRR ERRPSNDRPS LDRSRGSRDE
RRRPRRHHHR DNSRHGSNPS RGPPGSRAHD PYYPPRRGGG LAANGAPMRG PPPPHHWRGP
PSSGPPASRH RHRDLAALDR YDDFGRRRPP SRRSRSRSVS RSSSGTSSGY SSRSRSRSHS
RSRSRDRRPR RQRGGSSRNR RRSHNSSTTS DVEHATQVDN TYTKDQRTVF VTQLVQRTQE
RDLKKFFTRK GCKVNEVILL RDKRTGKHKG CAYVEMKRME DVSIAVGLSA EVPDFQRFPV
LVKASEAEKN YLANASTATS TAAQMGVPIK SAPLLGPDGK MLEAQKVYIG SLDPSVSQEH
LFALFSQFGQ LEKVTLQMDS NTGLSKGFAF LTFHDPKEAN LAIQTMANQA LAGRPMKTGW
ASQGSSIPGV EVVTSDEFPA DASTRAQRAY QVLAQLTMGV PVASVGQAPG TSSFAAAAAV
PGGASRIPTV AEARASLAGA VAMAPATPAV LVPTPAVAPL GSPDAKIVGN ADTPTKNVLI
RNMFDKDKET DPGWEKDIKE EFEDECSKYG TITSVTVMHM EPGGKIYASF DSVIGAQKCA
SSLAGRWFDK RQLRVDFVAD KDLPKDD
//
