ID B8R8G9_CAPBU Unreviewed; 658 AA.
AC B8R8G9;
DT 03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 03-MAR-2009, sequence version 1.
DT 27-MAR-2024, entry version 47.
DE SubName: Full=Phytochrome D {ECO:0000313|EMBL:ACL00910.1};
DE Flags: Fragment;
GN Name=PHYD {ECO:0000313|EMBL:ACL00910.1};
OS Capsella bursa-pastoris (Shepherd's purse) (Thlaspi bursa-pastoris).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.
OX NCBI_TaxID=3719 {ECO:0000313|EMBL:ACL00910.1};
RN [1] {ECO:0000313|EMBL:ACL00910.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=18768161; DOI=10.1016/j.ympev.2008.07.026;
RA Mathews S., McBreen K.;
RT "Phylogenetic relationships of B-related phytochromes in the Brassicaceae:
RT Redundancy and the persistence of phytochrome D.";
RL Mol. Phylogenet. Evol. 49:411-423(2008).
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235}.
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DR EMBL; EU907638; ACL00910.1; -; Genomic_DNA.
DR AlphaFoldDB; B8R8G9; -.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF00360; PHY; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 50..224
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 453..524
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 587..639
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:ACL00910.1"
FT NON_TER 658
FT /evidence="ECO:0000313|EMBL:ACL00910.1"
SQ SEQUENCE 658 AA; 72238 MW; CD3C78C3CDCBD77D CRC64;
AILHRVDVGI LIDLEPARTE DPALSIAGAV QSQKLAVRAI SHLQSLPGGD IKLLCDTVVD
SVRDLTGYDR VMVYKFHEDE HGEVVAESKR DDLEPYIGLH YPATGIPQAS RFLFKQNRVR
MIVDCHASPV RVVQDDRLTQ SICLVGSTLR APHGCHAQYM ANMGSIASLA MAVIINGNEE
DGNGVNSNTG GRNSMRLWGL VVCHHTSARC IPFPLRYACE FLMQAFGLQL NMELQLALQV
SEKRVLRMQT LLCDMLLRDS PAGIVTQKPS IMDLVKCNGA AFLYQGKYYS LGVAPTEAQI
NDIVKWVLGN HSDSTGLSTD SLGDAGYPGA AALGDAVCGM AVAYITKRDF LFWFRSHTEK
EIKWGGAKHH PEDKDDGQRM HPRSSFQAFL EVVKSRCQPW ETAEMDAIHS LQLILRDSFK
ESEAMNSKAA AAGALQPHGE AMAEQGMQEI GAVAREMVRL IETATVPIFA VDIDGCINGW
NAKIAELTGL SAEEAMGKSL VRDLIYKEYE ETVDRLLSCA LKGGESKNVE VKLQTFGLEL
QGKAVFVVVN PCSSKDYLNN IVGVCFVGQD VTGHKIVMDK FVNIQGDYKA IIHSPNPLIP
PIFAADENIC CLEWNTAMEK LTGWPRSEVI GKLLVREVFG SCCRLKGPDA LTKFMIVL
//
