ID B9FFW1_ORYSJ Unreviewed; 1321 AA.
AC B9FFW1;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 27-MAR-2024, entry version 63.
DE RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
GN ORFNames=OsJ_15297 {ECO:0000313|EMBL:EEE61245.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:EEE61245.1};
RN [1] {ECO:0000313|EMBL:EEE61245.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA Samudrala R., Wang J., Wong G.K., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [2] {ECO:0000313|EMBL:EEE61245.1}
RP NUCLEOTIDE SEQUENCE.
RA Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J.,
RA Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R.,
RA Kristiansen K., Wong G.K.-S.;
RT "Improved gene annotation of the rice (Oryza sativa) genomes.";
RL Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000256|RuleBase:RU004279}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|RuleBase:RU004279};
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC {ECO:0000256|RuleBase:RU004279}.
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DR EMBL; CM000141; EEE61245.1; -; Genomic_DNA.
DR Proteomes; UP000007752; Chromosome 4.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd02736; RNAP_III_Rpc1_C; 1.
DR CDD; cd02583; RNAP_III_RPC1_N; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 1.10.150.390; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 6.10.250.2940; -; 1.
DR Gene3D; 6.20.50.80; -; 1.
DR Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007080; RNA_pol_Rpb1_1.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR InterPro; IPR035698; RNAP_III_Rpc1_C.
DR InterPro; IPR035697; RNAP_III_RPC1_N.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF32; DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1; 1.
DR Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000256|RuleBase:RU004279};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW ECO:0000256|RuleBase:RU004279}; Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|RuleBase:RU004279};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 243..537
FT /note="RNA polymerase N-terminal"
FT /evidence="ECO:0000259|SMART:SM00663"
SQ SEQUENCE 1321 AA; 147216 MW; ADD885CCA154BD1F CRC64;
MARPEEKLRC TKEPFIEDVG TRRIKSIRFS MFSGNEVRQS AEVQVWNSRI YNHEMKPVPN
GLLDTRMGAA NKLGECSTCH GSFAECPGHF GYLKLALPVF NVGFFNCILD VLKCICKSCS
RVLLMEKDRL EFLKKMRNPK ADPLQKSAIM KKVRDKCKLS RCPWCGFING SVAKKGRAGL
IILHDCSKTL DGSTEELRDA LSHKKEKLSI SAVRMLDPAI VLSLFKRMTD EDCELLNLGD
RPEKLIVTEI AVPPVPIRPS VFVAGGRMSN EDSITVILKS IANTNSILKE NLQTGGQFMK
CFDCWQHLQL QVVEYINSDA PSLPESQHRG LVQRLKGKTG RFRGNLSGKR TEYTGRTVIS
PDPNLRITEV AIPILMARVL TYPERVSYYN IEKLRQCIRN GPHKHPGANF IIQPDGTKLH
LKYCDRRIAA RDLKYGCVVE RHLEDGDIVL FNRQPSLHRM SIMSHRARIM PWRTLRFNES
VCNPYNADFD GDEMNLHVPQ TEEARTEALM LMGPIELWTG KQLFSVLVRP NACTKVFLNL
TVKEKIYKTP KGSTLEPEAM CPNDGFVYFR NSELLSGQVG KATLGNGNKD GMFSTLVRDY
NSHAAASCMN RLAKFSARFI GNHGFSIGVD DVQPGEHLNQ EKKMKIDGGY KDCHDLIASY
SKGALRLQPG CNAAQTLEQS ITRVLNEIRE EAGKVCMNTL HWRNSPLIMS QCGSKGSPIN
ISQMVACVGQ QSVGGRRAPN GFIDRTLPHF PINSKTPAAK GFVANSFYTG LTATEFFFHT
MGGREGLVDT AVKTAETGYM SRRLMKGLED LSVFYDQTVR NASGGIVQFL YGDDGMDPAK
MEGKDGKPLN LDQLFMKVMA TCPQRGQNTL SPGEILQILN DKLSEHDASS DDGCSEKFKQ
LLTYFLEDRI KLLKSTRRAL LLDEDHVGER HSSFEESIAA NISGISVKQL QVFLDTCLSR
YHLKKIEAGA SIGAIGAQSI GEPGTQMTLK TFHFAGVASM NVTLGVPRIK EIINAAKKIS
TPIITAELLS EKDVLSARIV KGSMEKAVLG EVAEAIKIVL KSSQPNLVVK LDMQRIEALH
MGISADSVQL SILNHPKIKL KSEHVRVIDK SKLRIYPAGI DKSKLLYELH HLKSMLPKVI
VKGIPTVERA VISETGEEND KRYKLLVEGT NLLAVMGTPG VDAMKTKSNH IMEVNRTLGI
EAARRSIIDE IQYTMKSHGM NIDSRHMMLL ADLMTYKGEI LGITRYGIAK MKSSVLMLAS
FEKTAEHLFN ASYSGREDQI EGVSECIIMG IPMQLGTGIL KVRQRLDHLP EFKYQPDPIL
A
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