ID B9G6P8_ORYSJ Unreviewed; 1018 AA.
AC B9G6P8;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 24-JAN-2024, entry version 76.
DE RecName: Full=phospholipase D {ECO:0000256|ARBA:ARBA00012027};
DE EC=3.1.4.4 {ECO:0000256|ARBA:ARBA00012027};
GN ORFNames=OsJ_32215 {ECO:0000313|EMBL:EEE51295.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:EEE51295.1};
RN [1] {ECO:0000313|EMBL:EEE51295.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA Samudrala R., Wang J., Wong G.K., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [2] {ECO:0000313|EMBL:EEE51295.1}
RP NUCLEOTIDE SEQUENCE.
RA Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J.,
RA Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R.,
RA Kristiansen K., Wong G.K.-S.;
RT "Improved gene annotation of the rice (Oryza sativa) genomes.";
RL Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1,2-diacyl-
CC sn-glycero-3-phosphate + choline + H(+); Xref=Rhea:RHEA:14445,
CC ChEBI:CHEBI:15354, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378,
CC ChEBI:CHEBI:57643, ChEBI:CHEBI:58608; EC=3.1.4.4;
CC Evidence={ECO:0000256|ARBA:ARBA00000798};
CC -!- COFACTOR:
CC Name=Ca(2+); Xref=ChEBI:CHEBI:29108;
CC Evidence={ECO:0000256|ARBA:ARBA00001913};
CC -!- SIMILARITY: Belongs to the phospholipase D family. C2-PLD subfamily.
CC {ECO:0000256|ARBA:ARBA00010683}.
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DR EMBL; CM000147; EEE51295.1; -; Genomic_DNA.
DR AlphaFoldDB; B9G6P8; -.
DR Proteomes; UP000007752; Chromosome 10.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0070290; F:N-acylphosphatidylethanolamine-specific phospholipase D activity; IEA:UniProtKB-EC.
DR GO; GO:0004630; F:phospholipase D activity; IEA:UniProtKB-EC.
DR GO; GO:0016042; P:lipid catabolic process; IEA:UniProtKB-KW.
DR CDD; cd04015; C2_plant_PLD; 1.
DR Gene3D; 2.60.40.150; C2 domain; 1.
DR Gene3D; 3.30.870.10; Endonuclease Chain A; 2.
DR InterPro; IPR000008; C2_dom.
DR InterPro; IPR035892; C2_domain_sf.
DR InterPro; IPR001736; PLipase_D/transphosphatidylase.
DR InterPro; IPR024632; PLipase_D_C.
DR InterPro; IPR015679; PLipase_D_fam.
DR PANTHER; PTHR18896; PHOSPHOLIPASE D; 1.
DR PANTHER; PTHR18896:SF65; PHOSPHOLIPASE D BETA 1; 1.
DR Pfam; PF00168; C2; 1.
DR Pfam; PF12357; PLD_C; 1.
DR Pfam; PF00614; PLDc; 2.
DR PRINTS; PR01217; PRICHEXTENSN.
DR SMART; SM00239; C2; 1.
DR SMART; SM00155; PLDc; 2.
DR SUPFAM; SSF49562; C2 domain (Calcium/lipid-binding domain, CaLB); 1.
DR SUPFAM; SSF56024; Phospholipase D/nuclease; 2.
DR PROSITE; PS50004; C2; 1.
DR PROSITE; PS50035; PLD; 2.
PE 3: Inferred from homology;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Lipid degradation {ECO:0000256|ARBA:ARBA00022963};
KW Lipid metabolism {ECO:0000256|ARBA:ARBA00022963};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723}.
FT DOMAIN 198..335
FT /note="C2"
FT /evidence="ECO:0000259|PROSITE:PS50004"
FT DOMAIN 535..570
FT /note="PLD phosphodiesterase"
FT /evidence="ECO:0000259|PROSITE:PS50035"
FT DOMAIN 864..891
FT /note="PLD phosphodiesterase"
FT /evidence="ECO:0000259|PROSITE:PS50035"
FT REGION 1..180
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 13..44
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 52..99
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1018 AA; 113669 MW; A09E5F0C63459979 CRC64;
MEGGNHGGGG YPYPPPQQYP YPYGQYPYQY PPPQQQPPPP SAYLSPSRSF HGYPSAPPPQ
PQPQPYAHHS APLQPYPPPP QHHAYPPPQP HPPSPYVYDP YHAPAAAYPS YPSPNPSPSI
SPSSSFRTPR ITPRPPLPAA VPAASSPSVL PPSASFPGGG SSHGGGGMQM VPYGPPAGGS
QHGGMQMVAY GSPAGGSQHG SVRPSLKVVL LHGTLDVWVY DARNLPNKDL FSKRVGDLLG
PRLIGAVGSK MSSANMTSDP YVTIQVSYAT VARTYVVPNN ENPVWTQNFL VPVGHDAAEV
EFVVKDNDVF GAQLIGTVSI PAEKLLFGER INGIYDVLES NGKPCAQGAV LRLSIQYIPV
AQLKMYHHGV IAGPDSLGVP NTYFPMRRGN RVTLYQDAHV PDGCLPDFCL DHGMRYQHGQ
CWRDIYDAIC QARRLIYIVG WSVFHTIHLI REGVEKMPSL GELLKMKSQE GVRVLLLVWD
DPTSRSILGI KTDGFMGTRD EETRRFFKHS SVQVLLCPRS AGKRHSWVKQ QETGTIFTHH
QKTVILDADA GNHKRKIIAF VGGLDLCGGR YDTPSHPLFR SLQTVHKEDY YNPNFATVDA
RGPREPWHDL HSKIDGPAAY DVLQNFQERW LKASKRHGIK KLGKSYDDAL LSIERIPDFI
SINDAIYFSD NDPETWHVQV FRSIDSNSAK GFPKDPREAT RKNLVCGKNV LIDMSIHTAY
VNAIRGAQHF IYIENQYFIG SSFNWDSNKD IGANNLIPIE IALKIANKIK AKERFSAYIV
IPMWPEGNPT GAPTQRILYW QHKTMQMMYE TIYRALKEEG LDDLYEPQDY LNFFCLGNRE
VADSPSTSNS TSTPQEQARK HRRFMVYVHS KGMIVDDEYV IIGSANINQR SMEGIRDTEI
AMGAYQPQYT WASKVSAPRG QIYGYRMSLW AEHIGVVEEG FNYPETMECM RRVRQIGEQN
WERFVDNEVT EMRGHLMKYP VSVDRKGKVK PLPGCTSFPD MGGNICGSFR AIQENLTI
//
