ID   C0KKZ2_9POTV            Unreviewed;       480 AA.
AC   C0KKZ2;
DT   05-MAY-2009, integrated into UniProtKB/TrEMBL.
DT   05-MAY-2009, sequence version 1.
DT   27-MAR-2024, entry version 54.
DE   RecName: Full=Genome polyprotein {ECO:0000256|ARBA:ARBA00020107};
DE   Flags: Fragment;
OS   Lily mottle virus.
OC   Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes;
OC   Patatavirales; Potyviridae; Potyvirus.
OX   NCBI_TaxID=32624 {ECO:0000313|EMBL:ACN22474.1};
RN   [1] {ECO:0000313|EMBL:ACN22474.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Cohen D., Pearson M.N., Cowell S.J., Jones D., Blouin A., Lebas B.S.M.,
RA   Shiller J.B., Clover G.R.;
RT   "A survey of viruses of flower bulbs in New Zealand.";
RL   Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Involved in aphid transmission, cell-to-cell and systemis
CC       movement, encapsidation of the viral RNA and in the regulation of viral
CC       RNA amplification. {ECO:0000256|ARBA:ARBA00029405}.
CC   -!- SUBCELLULAR LOCATION: Virion {ECO:0000256|ARBA:ARBA00004328}.
CC   -!- SIMILARITY: Belongs to the potyviridae genome polyprotein family.
CC       {ECO:0000256|ARBA:ARBA00006064, ECO:0000256|RuleBase:RU003351}.
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DR   EMBL; FJ618539; ACN22474.1; -; Genomic_RNA.
DR   GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
DR   GO; GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0003968; F:RNA-dependent RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR   GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
DR   Gene3D; 3.30.70.270; -; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR001592; Poty_coat.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR001205; RNA-dir_pol_C.
DR   InterPro; IPR007094; RNA-dir_pol_PSvirus.
DR   Pfam; PF00767; Poty_coat; 1.
DR   Pfam; PF00680; RdRP_1; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   PROSITE; PS50507; RDRP_SSRNA_POS; 1.
PE   3: Inferred from homology;
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW   RNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022484};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679};
KW   Viral RNA replication {ECO:0000256|ARBA:ARBA00022953};
KW   Virion {ECO:0000256|ARBA:ARBA00022844}.
FT   DOMAIN          1..55
FT                   /note="RdRp catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50507"
FT   REGION          216..246
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   NON_TER         1
FT                   /evidence="ECO:0000313|EMBL:ACN22474.1"
SQ   SEQUENCE   480 AA;  54469 MW;  8A0D966280385448 CRC64;
     GQPSTVVDNT IMVILAIHYS YKYLKITKPL DEFCKYFVNG DDLLLAVAPE FEYLLDHFAN
     TFQQLGLNYD FSSRTKNREE LWFMSHRGIM TDGLYIPKLE PERIVSILEW DRAVEPVHRL
     EAICASMIEA WGYPQLLHEI RKFYYWVLEQ APYSELAQLG KAPYLSEAAL RALYTGEATS
     QDELERYLAV LNLEGECGGA EIVAFQANET LNAGASSSTQ ASRSTRPEAA IDVAPQQSSE
     ARVRDRDVDA GTVGTYQIPR LKALATKINV PKVKGRMIVN TGHLVNYNPD QTDISNTRST
     QKQFEAWYNA VKDEYGLNDE SMALAMNGLM VWCIENGTSP NVNGVWLMMD GDQQVEFPLR
     PILEHAKPTL RQIMAHFSNL AEAYIEKQNL EKPYMPRYGL QRNLTDFNLA RFAFEFYEVT
     SRTPARAKEA HFQMKTAALR GKQSKLFGLD GKVNTQDEDT ERHTADDVNK NMHSLLGISM
//