ID C0PDC1_MAIZE Unreviewed; 318 AA.
AC C0PDC1;
DT 05-MAY-2009, integrated into UniProtKB/TrEMBL.
DT 05-MAY-2009, sequence version 1.
DT 27-MAR-2024, entry version 85.
DE SubName: Full=Splicing factor CC1-like {ECO:0000313|EMBL:AQK65318.1};
GN Name=100383130 {ECO:0000313|EnsemblPlants:Zm00001eb222690_P002};
GN ORFNames=ZEAMMB73_Zm00001d014138 {ECO:0000313|EMBL:AQK65318.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN32166.1};
RN [1] {ECO:0000313|EMBL:ACN32166.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=B73 {ECO:0000313|EMBL:ACN32166.1};
RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740;
RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J.,
RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J.,
RA Walbot V., Yu Y.;
RT "Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.";
RL PLoS Genet. 5:E1000740-E1000740(2009).
RN [2] {ECO:0000313|EnsemblPlants:Zm00001eb222690_P002, ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb222690_P002,
RC ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., Abbott R.M.,
RA Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., Gillam B.,
RA Chen W., Yan L., Higginbotham J., Cardenas M., Waligorski J., Applebaum E.,
RA Phelps L., Falcone J., Kanchi K., Thane T., Scimone A., Thane N., Henke J.,
RA Wang T., Ruppert J., Shah N., Rotter K., Hodges J., Ingenthron E.,
RA Cordes M., Kohlberg S., Sgro J., Delgado B., Mead K., Chinwalla A.,
RA Leonard S., Crouse K., Collura K., Kudrna D., Currie J., He R.,
RA Angelova A., Rajasekar S., Mueller T., Lomeli R., Scara G., Ko A.,
RA Delaney K., Wissotski M., Lopez G., Campos D., Braidotti M., Ashley E.,
RA Golser W., Kim H., Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A.,
RA Fan C., Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., Jeddeloh J.A.,
RA Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., Nagel D.H., McCann M.C.,
RA SanMiguel P., Myers A.M., Nettleton D., Nguyen J., Penning B.W.,
RA Ponnala L., Schneider K.L., Schwartz D.C., Sharma A., Soderlund C.,
RA Springer N.M., Sun Q., Wang H., Waterman M., Westerman R., Wolfgruber T.K.,
RA Yang L., Yu Y., Zhang L., Zhou S., Zhu Q., Bennetzen J.L., Dawe R.K.,
RA Jiang J., Jiang N., Presting G.G., Wessler S.R., Aluru S.,
RA Martienssen R.A., Clifton S.W., McCombie W.R., Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [3] {ECO:0000313|EMBL:AQK65318.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQK65318.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EnsemblPlants:Zm00001eb222690_P002}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb222690_P002};
RG EnsemblPlants;
RL Submitted (MAY-2021) to UniProtKB.
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DR EMBL; BT066290; ACN32166.1; -; mRNA.
DR EMBL; CM000781; AQK65318.1; -; Genomic_DNA.
DR EMBL; CM000781; AQK65320.1; -; Genomic_DNA.
DR EMBL; CM000781; AQK65321.1; -; Genomic_DNA.
DR EMBL; CM000781; AQK65323.1; -; Genomic_DNA.
DR EMBL; CM000781; AQK65326.1; -; Genomic_DNA.
DR EMBL; CM000781; AQK65327.1; -; Genomic_DNA.
DR EMBL; CM000781; AQK65328.1; -; Genomic_DNA.
DR EMBL; CM000781; AQK65330.1; -; Genomic_DNA.
DR EMBL; CM000781; AQK65331.1; -; Genomic_DNA.
DR EMBL; CM000781; AQK65335.1; -; Genomic_DNA.
DR RefSeq; NP_001169267.1; NM_001175796.1.
DR AlphaFoldDB; C0PDC1; -.
DR EnsemblPlants; Zm00001eb222690_T002; Zm00001eb222690_P002; Zm00001eb222690.
DR EnsemblPlants; Zm00001eb222690_T003; Zm00001eb222690_P003; Zm00001eb222690.
DR EnsemblPlants; Zm00001eb222690_T004; Zm00001eb222690_P004; Zm00001eb222690.
DR Gramene; Zm00001eb222690_T002; Zm00001eb222690_P002; Zm00001eb222690.
DR Gramene; Zm00001eb222690_T003; Zm00001eb222690_P003; Zm00001eb222690.
DR Gramene; Zm00001eb222690_T004; Zm00001eb222690_P004; Zm00001eb222690.
DR OMA; IRMPNDN; -.
DR OrthoDB; 5480707at2759; -.
DR Proteomes; UP000007305; Chromosome 5.
DR ExpressionAtlas; C0PDC1; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006397; P:mRNA processing; IEA:InterPro.
DR CDD; cd12284; RRM2_RBM23_RBM39; 1.
DR CDD; cd12285; RRM3_RBM39_like; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR029123; RBM39_linker.
DR InterPro; IPR006509; RBM39_SF.
DR InterPro; IPR000504; RRM_dom.
DR NCBIfam; TIGR01622; SF-CC1; 1.
DR PANTHER; PTHR48036:SF13; OS10G0439600 PROTEIN; 1.
DR PANTHER; PTHR48036; SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED; 1.
DR Pfam; PF15519; RBM39linker; 1.
DR Pfam; PF00076; RRM_1; 2.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 2.
PE 1: Evidence at protein level;
KW Phosphoprotein {ECO:0000256|ARBA:ARBA00022553};
KW Proteomics identification {ECO:0007829|PeptideAtlas:C0PDC1};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}.
FT DOMAIN 46..124
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 230..308
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
SQ SEQUENCE 318 AA; 32965 MW; 6A3B689514BC37F0 CRC64;
MSVPMAIALS GQPLLGQAVM VKPSEAEKNL VQSNATSGGA ASGGARKLYV GNLHSNITED
QLRQVFEPFG QVELVQLPLD AMTGLCKGYG FIQFARLEDA KAAQSLNGQL DIAGRVIKVS
AVTDHVGVQA SGATTGDLDD DEGGGLALNA SSRAALMLKL DRSGTATSLT GGIGAAGVAV
PATSVIGAAG AASLLSPTVS AVGSVPGAPV LPITAQNVIM STPTEFLLLK NMFDPSLETD
PDFDLDIRDD VQDECSKFGA VKHIFVDKNT AGFVYLQFDS VTAAGKAQQA LHGRWFAGKM
ITATFMSDQE YSTKFPNL
//
