ID C1IWL9_IDASC Unreviewed; 579 AA.
AC C1IWL9;
DT 26-MAY-2009, integrated into UniProtKB/TrEMBL.
DT 26-MAY-2009, sequence version 1.
DT 27-MAR-2024, entry version 47.
DE SubName: Full=Phytochrome A {ECO:0000313|EMBL:ACN56849.1};
DE Flags: Fragment;
GN Name=PHYA {ECO:0000313|EMBL:ACN56849.1};
OS Idahoa scapigera (Scalepod) (Platyspermum scapigerum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis;
OC Idahoa.
OX NCBI_TaxID=224274 {ECO:0000313|EMBL:ACN56849.1};
RN [1] {ECO:0000313|EMBL:ACN56849.1}
RP NUCLEOTIDE SEQUENCE.
RA Beilstein M.A., Al-Shehbaz I.A., Mathews S., Kellogg E.A.;
RT "Brassicaceae phylogeny inferred from phytochrome A and ndhF sequence data:
RT tribes and trichomes revisited.";
RL Am. J. Bot. 95:1307-1327(2008).
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235}.
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DR EMBL; EU915132; ACN56849.1; -; Genomic_DNA.
DR AlphaFoldDB; C1IWL9; -.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00989; PAS; 1.
DR Pfam; PF00360; PHY; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 34..212
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 440..510
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:ACN56849.1"
FT NON_TER 579
FT /evidence="ECO:0000313|EMBL:ACN56849.1"
SQ SEQUENCE 579 AA; 64488 MW; B795353A8A5F4CAB CRC64;
VKPYEVPMTA AGALQSYKLA AKAVTRLQSL PSGSTERLCD TMVQEVFELT GYDRVMAYKF
HDDDHGEVVS EVTKPGLETY LGLHYPATDI PQASRFLFMK NKVRMIVDCN AKHATVLQDE
KLSFELTLCG STLRAPHSCH LQYMANMGSI ASLVMAVVVN EEDGEVDAAP PDSSSTTQPQ
KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK EVELENQYVE KNILRTQTLL
CDMLMRDAPL GIVTQSPNIM DLVKCDGAAL LYKDKIWKLG ITPSEFHLQE IASWLCEYHT
DSTGLSTDSL HDAGFPKALA LGDSVCGMAA VRISSSSEDM IFWFRSHTAG EVRWGGAKHD
PDDRDDARRM HPRSSFKAFL EVVKTRSLPW KDYEMDATHS LQLILRNAFK DGETTDDNTN
IIHSKLNDLK IDGIQELEAI TSEMVRLIET ATVPILAVDS DGLVNGWNTK IADLTGLPVD
EAIGKHLLSL VEDSSLEIVK RMLENALQGT EEHSVEFEIK TYQSMAESGP ISLVVNACAS
RDLHENVVGV CFVAHDLTGQ KTVMDKFTWI EGDYKAILQ
//
