ID   C3XRZ1_BRAFL            Unreviewed;       804 AA.
AC   C3XRZ1;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   27-MAR-2024, entry version 67.
DE   RecName: Full=S1 motif domain-containing protein {ECO:0000259|PROSITE:PS50126};
GN   ORFNames=BRAFLDRAFT_123927 {ECO:0000313|EMBL:EEN69459.1};
OS   Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC   Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC   Branchiostomatidae; Branchiostoma.
OX   NCBI_TaxID=7739;
RN   [1] {ECO:0000313|EMBL:EEN69459.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN69459.1};
RC   TISSUE=Testes {ECO:0000313|EMBL:EEN69459.1};
RX   PubMed=18563158; DOI=10.1038/nature06967;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA   Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA   Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA   Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA   Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA   Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA   Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA   Satoh N., Rokhsar D.S.;
RT   "The amphioxus genome and the evolution of the chordate karyotype.";
RL   Nature 453:1064-1071(2008).
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DR   EMBL; GG666456; EEN69459.1; -; Genomic_DNA.
DR   RefSeq; XP_002613450.1; XM_002613404.1.
DR   AlphaFoldDB; C3XRZ1; -.
DR   STRING; 7739.C3XRZ1; -.
DR   eggNOG; KOG1857; Eukaryota.
DR   InParanoid; C3XRZ1; -.
DR   GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR   GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR   GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IBA:GO_Central.
DR   CDD; cd05685; S1_Tex; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR   Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR   Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR   Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR   Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR   InterPro; IPR041692; HHH_9.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR010994; RuvA_2-like.
DR   InterPro; IPR003029; S1_domain.
DR   InterPro; IPR044146; S1_Tex.
DR   InterPro; IPR023323; Tex-like_dom_sf.
DR   InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR   InterPro; IPR018974; Tex-like_N.
DR   InterPro; IPR032639; Tex_YqgF.
DR   InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR   InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR   PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR   PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR   Pfam; PF12836; HHH_3; 1.
DR   Pfam; PF17674; HHH_9; 1.
DR   Pfam; PF00575; S1; 1.
DR   Pfam; PF09371; Tex_N; 1.
DR   Pfam; PF16921; Tex_YqgF; 1.
DR   SMART; SM00316; S1; 1.
DR   SMART; SM00732; YqgFc; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR   SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR   PROSITE; PS50126; S1; 1.
PE   4: Predicted;
FT   DOMAIN          732..800
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   REGION          601..627
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   804 AA;  89433 MW;  C5447FFD6F0DFF5B CRC64;
     MAMAQKKMAS AKPGEKTSSA GVSMLWETAY VLADRQDIDN YIAANIIELL DEGCTVPFIA
     RYRKEKTGNM EAEKLREVQA VYEELKGVQQ KACTVVKQVE KQGKMTDGLL SAIRRSTTTE
     ELEHLYAPYK VGSKATLAER ARQLGLEPAA MAVLSQPHSY RPQQLVRAGQ EGLQSLEEVE
     RGVQHIIADI VSKDKETMDT IRAMCKAGHV RLESTKSKST AKKEKEQENT THKFEQYYTF
     SCPIKFIKPH QVLAINRGES QKILSVKINI PDDVKTRFLA FCDRRWIPRN APQHVVGVIR
     KAVEDAYSRL IQPLMVRHYR ADLTKTAEKQ SAAVFSHNLQ RLLLQPPVRG RVVLGVDPGY
     RHGCKLALTS PTGQILHTDV VYLHDNRALR EADRVKRILL THRCQTVAIG NGTACRETEA
     FFSQHIQQGT FRPLDVVYCI VNESGASIYS VSDEAKKEMP DLDPNLRSAV SIARRLQDPL
     VELVKIEPKN IGVGMYQHDI SESMLKAALD GVVEECVSFV GVDINVCSET LLRRLAGLNA
     SKAKKVVEWR EANGAFINRE QLRSVKGLGP KTFEQCAGFI RINPISINRY ASLEKANIHE
     EQSANTAQGK KRKAAAEPKR KTKKAKTEAN MTLNPLDMTC IHPESYPIAL QFLNRIGGSL
     KELGQQNMRT KVQAALMKNN VEGLAAELKC GTPTMQLIID GLQQPLDYDI RAEFEKPLFK
     KGLVSMSDLK TGTTLTGRVT NLTDFGAFVD IGVGKDGLIH KSKIRPDRLK GKKCLGPGDK
     VEVKVLNVDP SRGRIGLELL ALIG
//