ID C3YDM5_BRAFL Unreviewed; 375 AA.
AC C3YDM5;
DT 28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT 28-JUL-2009, sequence version 1.
DT 27-MAR-2024, entry version 71.
DE SubName: Full=High mobility group protein 20A-like isoform X1 {ECO:0000313|RefSeq:XP_035670639.1};
GN Name=LOC118412108 {ECO:0000313|RefSeq:XP_035670639.1};
GN ORFNames=BRAFLDRAFT_126796 {ECO:0000313|EMBL:EEN61494.1};
OS Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC Branchiostomatidae; Branchiostoma.
OX NCBI_TaxID=7739;
RN [1] {ECO:0000313|EMBL:EEN61494.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN61494.1};
RC TISSUE=Testes {ECO:0000313|EMBL:EEN61494.1};
RX PubMed=18563158; DOI=10.1038/nature06967;
RG US DOE Joint Genome Institute (JGI-PGF);
RA Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA Satoh N., Rokhsar D.S.;
RT "The amphioxus genome and the evolution of the chordate karyotype.";
RL Nature 453:1064-1071(2008).
RN [2] {ECO:0000313|RefSeq:XP_035670639.1}
RP IDENTIFICATION.
RC STRAIN=S238N-H82 {ECO:0000313|RefSeq:XP_035670639.1};
RC TISSUE=Testes {ECO:0000313|RefSeq:XP_035670639.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
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DR EMBL; GG666504; EEN61494.1; -; Genomic_DNA.
DR RefSeq; XP_002605484.1; XM_002605438.1.
DR RefSeq; XP_035670639.1; XM_035814746.1.
DR STRING; 7739.C3YDM5; -.
DR KEGG; bfo:118412108; -.
DR eggNOG; KOG0381; Eukaryota.
DR InParanoid; C3YDM5; -.
DR OMA; DQQNNAM; -.
DR OrthoDB; 37141at2759; -.
DR Proteomes; UP000001554; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR CDD; cd21980; HMG-box_HMG20; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR PANTHER; PTHR46040; HIGH MOBILITY GROUP PROTEIN 2; 1.
DR PANTHER; PTHR46040:SF3; HIGH MOBILITY GROUP PROTEIN 2; 1.
DR Pfam; PF00505; HMG_box; 1.
DR PRINTS; PR00886; HIGHMOBLTY12.
DR SMART; SM00398; HMG; 1.
DR SUPFAM; SSF47095; HMG-box; 1.
DR PROSITE; PS50118; HMG_BOX_2; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU00267};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW ProRule:PRU00267}; Reference proteome {ECO:0000313|Proteomes:UP000001554}.
FT DOMAIN 125..193
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 125..193
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 43..125
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 203..231
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 245..307
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 43..94
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 375 AA; 42574 MW; 6BCDC13CDB79236E CRC64;
MDLGDSNSSQ GLLPNSGSST ALHTGLLNFE GIDDEVSKES NDLTVDASFT GDGSNFSGRG
QTLSNPEYVT DLSQVELLQN EGGADNTGTA AQEGQKEEQP PPVKKKGGWP KGKKRKRVTK
DVNAPKAPLT GYVRFLNERR EKMRQDNPNV PFPEITRMLG NEWSKLAPHE KQQYLDEAEK
DKERYMKELE EYQQTEAYKL FQKKQQEKKK KDDDPSTVNG EQEDKEDEVP TFDVPIFTEE
FLDHNKAREV ELRQLRKSNT EYEEQNAILQ KHIENMKTAI EKLEVEAMQQ KNNNLALQQH
LDALRNTLYQ NFSSLPLPGM ASFSSGSGEV PTLETIDGYM AKLHNMILEN PQQHESLIQQ
VREVVGRLDY QGEKL
//
