ID   C5J5C3_9GAMM            Unreviewed;       238 AA.
AC   C5J5C3;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   03-MAY-2023, entry version 34.
DE   SubName: Full=DNA-directed RNA polymerase subunit D {ECO:0000313|EMBL:CAR94580.1};
DE   Flags: Fragment;
GN   Name=rpoD {ECO:0000313|EMBL:CAR94580.1};
OS   uncultured Gammaproteobacteria bacterium.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; environmental samples.
OX   NCBI_TaxID=86473 {ECO:0000313|EMBL:CAR94580.1};
RN   [1] {ECO:0000313|EMBL:CAR94580.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Mulet M., Bennasar A., Lalucat J., Garcia-Valdes E.;
RT   "An rpoD-based PCR procedure for the identification of Pseudomonas species
RT   and for their detection in environmental samples.";
RL   Mol. Cell. Probes 23:140-147(2009).
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DR   EMBL; FM253762; CAR94580.1; -; Genomic_DNA.
DR   AlphaFoldDB; C5J5C3; -.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR   InterPro; IPR007631; RNA_pol_sigma_70_non-ess.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   Pfam; PF04546; Sigma70_ner; 1.
DR   SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
PE   4: Predicted;
KW   DNA-directed RNA polymerase {ECO:0000313|EMBL:CAR94580.1};
KW   Transcription {ECO:0000313|EMBL:CAR94580.1}.
FT   DOMAIN          29..222
FT                   /note="RNA polymerase sigma factor 70 non-essential"
FT                   /evidence="ECO:0000259|Pfam:PF04546"
FT   REGION          60..95
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        70..95
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   NON_TER         1
FT                   /evidence="ECO:0000313|EMBL:CAR94580.1"
FT   NON_TER         238
FT                   /evidence="ECO:0000313|EMBL:CAR94580.1"
SQ   SEQUENCE   238 AA;  27061 MW;  114272C18734BE04 CRC64;
     RLLTREGEIR IAKRIEEGLN QVKAALCLFP PTFDHLRISY EIIRAGEARL TDLLTGFVDP
     NAPDEIAQPN AKTQEEKDKE KAEDTGPDPA EADKRLKSIF RRQKRLMSTI ETDGREAKKV
     INAQQKLTGE LAEINLAPKL FEALCNNLRG TIGSIRQLEK QVMVICIREA GMARKEFIAS
     FPKNETNLNW VDKHIRAKRK YSSILSKMKP DIQRAQRKLQ AIKVETGMSI AEIKDVNR
//