ID C5LC89_PERM5 Unreviewed; 771 AA.
AC C5LC89;
DT 28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT 28-JUL-2009, sequence version 1.
DT 27-MAR-2024, entry version 57.
DE RecName: Full=Gypsy retrotransposon integrase-like protein 1 {ECO:0000256|ARBA:ARBA00039658};
GN ORFNames=Pmar_PMAR011603 {ECO:0000313|EMBL:EER05572.1};
OS Perkinsus marinus (strain ATCC 50983 / TXsc).
OC Eukaryota; Sar; Alveolata; Perkinsozoa; Perkinsea; Perkinsida; Perkinsidae;
OC Perkinsus.
OX NCBI_TaxID=423536 {ECO:0000313|Proteomes:UP000007800};
RN [1] {ECO:0000313|EMBL:EER05572.1, ECO:0000313|Proteomes:UP000007800}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 50983 / TXsc {ECO:0000313|Proteomes:UP000007800};
RA El-Sayed N., Caler E., Inman J., Amedeo P., Hass B., Wortman J.;
RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; GG680918; EER05572.1; -; Genomic_DNA.
DR RefSeq; XP_002773756.1; XM_002773710.1.
DR AlphaFoldDB; C5LC89; -.
DR EnsemblProtists; EER05572; EER05572; Pmar_PMAR011603.
DR GeneID; 9042322; -.
DR InParanoid; C5LC89; -.
DR OrthoDB; 217724at2759; -.
DR Proteomes; UP000007800; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd15489; PHD_SF; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR47266; ENDONUCLEASE-RELATED; 1.
DR PANTHER; PTHR47266:SF28; GYPSY RETROTRANSPOSON INTEGRASE-LIKE PROTEIN 1; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 2.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000007800};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 449..627
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT DOMAIN 723..769
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
SQ SEQUENCE 771 AA; 85421 MW; 19965656C3BA1F81 CRC64;
MEGMIGEQLA VEDAVGKDTT LYLERHLYYN YRGRYVEISG GVNESLARAH ADCARVLASV
EAAWDSVDSE GSWKKPASVH LGLAQRYWVE AKRVEDSDLR LFKGLEHLIA DVDASAGGYG
FVWRDPEGRV VRAEARVQSK SMALGSWHCN RRELFVIAAC LRRLDEEIPL FSDLKRVEIR
GDSRVAVRQA DPWNVPACKS MERRAILRLR GVVAEATHAL KCGTPSVTVT FAHLPGVSND
IADALSRVSL TSKYIPVLEK REAVILAGCA AVEAHSWLAD EAGGIHSIAS VQRWRRLRAC
FFALKGVEDP LDNAELFGHF LKTEQDKDPF CTRTSSDGQS DGRCIIPGLS YSFEKRQGLL
YRVRPNCPID DGPRLQLVLP QALVPEVVIA IHQEGGHAGL TATLASLYTV AWSPGVRKVA
RKALRGCLSC ALTRDRGTRA QVAFGASKIP IAPYDCIGID IYGPLRKVNG EAESQGGAPR
TRQVLSVVDR LTGHASFFLM KDARSKTLVD QLELFFWRIG KWPKEIWCDN AKNFVEAAPL
VSFAMMIDCR LRTTPSYTPQ CGGFWERKHR EVSETLRSCL CANPEASWKW LMAIAEARVN
SVFAEEWLQA REDLSNKFQA KVAKKAVDNR PLAIGDKVIL YRPGNVPGMK LAPKATGPYY
VLKKIGTQCY DIGVAPKGTT PTSSPQRSWM VHSSRIRRFE GEGGDGNNVE IPTVGAALKS
DENNICPSCR ETHSGTLVCC DGCDRWFHMS CTDYDGFQES WYCAVCMAAR E
//
