ID C5NNT6_ORYSI Unreviewed; 1727 AA.
AC C5NNT6;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 68.
DE RecName: Full=RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00012493};
DE EC=2.7.7.49 {ECO:0000256|ARBA:ARBA00012493};
GN Name=OsPupK36-1 {ECO:0000313|EMBL:BAH80025.1};
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946 {ECO:0000313|EMBL:BAH80025.1};
RN [1] {ECO:0000313|EMBL:BAH80025.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=19422603; DOI=10.1111/j.1467-7652.2009.00415.x;
RA Heuer S., Lu X., Chin J.H., Pariasca-Tanaka J., Kanamori H., Matsumoto T.,
RA De Leon T., Ulat V.J., Ismail A.M., Yano M., Wissuwa M.;
RT "Comparative sequence analyses of the major quantitative trait locus
RT phosphorus uptake 1 (Pup1) reveal a complex genetic structure.";
RL Plant Biotechnol. J. 7:456-457(2009).
RN [2] {ECO:0000313|EMBL:BAH80025.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=21602323; DOI=10.1104/pp.111.175471;
RA Chin J.H., Gamuyao R., Dalid C., Bustamam M., Prasetiyono J.,
RA Moeljopawiro S., Wissuwa M., Heuer S.;
RT "Developing rice with high yield under phosphorus deficiency: Pup1 sequence
RT to application.";
RL Plant Physiol. 156:1202-1216(2011).
RN [3] {ECO:0000313|EMBL:BAH80025.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=22914168; DOI=10.1038/nature11346;
RA Gamuyao R., Chin J.H., Pariasca-Tanaka J., Pesaresi P., Catausan S.,
RA Dalid C., Slamet-Loedin I., Tecson-Mendoza E.M., Wissuwa M., Heuer S.;
RT "The protein kinase Pstol1 from traditional rice confers tolerance of
RT phosphorus deficiency.";
RL Nature 488:535-539(2012).
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DR EMBL; AB458444; BAH80025.1; -; Genomic_DNA.
DR GO; GO:0004190; F:aspartic-type endopeptidase activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR GO; GO:0006508; P:proteolysis; IEA:InterPro.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR001969; Aspartic_peptidase_AS.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041373; RT_RNaseH.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR45835:SF87; RNA-DIRECTED DNA POLYMERASE; 1.
DR PANTHER; PTHR45835; YALI0A06105P; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF17917; RT_RNaseH; 1.
DR Pfam; PF08284; RVP_2; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF50630; Acid proteases; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS00141; ASP_PROTEASE; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50878; RT_POL; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00022918};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 566..581
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 814..993
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 1358..1521
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 478..540
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1696..1727
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 489..540
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1696..1711
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1712..1727
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1727 AA; 197239 MW; 94050DB296ECE6AB CRC64;
MGVAGESMPL VVEGVIMIQE RCTVMPPHSP RNLIEVLGFV RELRLMAFEV GYEVAPEYRQ
IPHDPDEEKC RVRVTLASDS EDLPSFKFEA GGRSYCHACQ EVALVAIGEL RQHFEEELDS
SAFRYHPHKP HGQDYGSYTC PDGEESATLM HVVHMLNAMD TVGVEREKAA HDRENWNRGQ
ICKLKSKVHR LQKELAELKG EAPPPTSKLR LTARKRTYPP PRLQLASNIR VMGEVVPDRA
EPVIDIMVNT RTGTGSGSGS GANNNEGEPT LAQILAQQTQ LINLLVQQAQ NQQGNNQNQN
PPPPPQNKLA DFLRVRPPTF SSTTNPVEAG DWLHAVEKKL DLIQCTEQEK VSFASHQLHG
PAAEWWDHFR QGRAGGEPIT WQEFTAAFKK THIPTGVVAL KKREFRALSQ GSRSVTEYLH
DFNRLARYAP EDVRTDEERQ EKFLEGLNDE LSYTLMSTEF RDFQQLVDKA IRQEDKYNRM
EQKKRRAAQF KAQQGSNQRP RLITGPQVPS YPQGGSSSVV RPQRQFYNNN TGNRGNDNRN
VVARPAATST QNQSVRKDQG SKPVICFNCG DPGHYADKCP KPRRVKNAPV PNNSNASAPK
ARVNHVAAAE AQNAPDVVLG TFPVNSIPAT VLFDSGATHS FLSKSFATKH GMEVVSLGRP
LLVNTPGNQV SSTRYCPSVT IEIEEVLFPS SLILLESKDL DVILGMDWLS RHRGVIDCAN
RKVTLTNSNG ETVSFFASSP KSHGVVLNQV ALQEIPIVQD YPDVFPEDLP GMPPKRDIEF
RIDLVPGTNP IHKRPYRMAA NELAEVKKQV DDLLQKGYIR PSTSPWGAPV IFVEKKDHTQ
RMCVDYRALN EVTIKNKYPL PRIDDLFDQL EGATVFSKID LRSGYHQLRI REEDIPKTAF
TTRYGLFECT VMSFGLTNAP AFFMNLMNKV FMEYLDKFVV VFIDDILIYS KTKEEHEEHL
RLALEKLREH QLYAKFSKCE FWLSEVKFLG HVISSGGVAV DPSNVESVLS WKQPKTVSEV
RSFLGLAGYY RRFIENFSKI ARPMTRLLQK DGKYKWTEDC ERSFQELKKR LVSAPVLILP
DSRKDFQVYC DASRHGLGCV LMQEGKVVAY ASRQLRPHEN NYPTHDLELA AVVHALKIWR
HYLYGNRTEI YTDHKSLKYI FTQPDLNMRQ RRWLELIKDY DMEIHYHPGK ANVVADALSR
KSYCNMSEGR CLPWELCQEF EKLNLGIVSK GFVATLEAKP TLFDQIREAQ VNDPDIQEIK
KNMRRGKAIG FVEDERGTVW LGERICVPEN KELKDTIMKE AHETLYSIHP GSTKMYQDLK
QQFWWASMRR EIAEYVALCD VCQRVKAEHQ RPAGLLQPLK IPEWKWEEIG MDFITGLPRT
SAGHDSIWVV VDRLTKVAHF IPVKTTYTGH KLAELYMARV VCLHGVPKKI VSDRGSQFTS
KFWQKLQSEL GTRLNFSTAY HPQTDGQTER VNQILEDMLR ACVLDFGGSW DKNLPYPEFS
YNNSYQASLQ MSPNEALYGR KCRTPLLWDQ IGERQVFGTD ILREAEEKVK IIQQRLRVAQ
SRQKSYADNR RRDLTFEEGD YVYLRVTPLR GVHRFQTKGK LAPRFVGPFK IVSRRGEVAY
QLELPPSMAG IHDVFHVSQL KKCLRVPTEE ADPDRIELQE DLTYVEKPVR ILEVSERKTR
NRVIRFCKVQ WSNHSEEEAT WEREDELKSA HPHLFSSSSE SRGRDSV
//
