ID C5WYD4_SORBI Unreviewed; 838 AA.
AC C5WYD4;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 79.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EER94065.1};
GN ORFNames=SORBI_3001G217200 {ECO:0000313|EMBL:EER94065.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER94065.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EER94065.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|EMBL:EER94065.1}
RP NUCLEOTIDE SEQUENCE.
RA Paterson A., Mullet J., Bowers J., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A., Chapman J., Feltus F.,
RA Gowik U., Grigoriev I., Lyons E., Maher C., Martis M., Narechania A.,
RA Otillar R., Penning B., Salamov A., Wang Y., Zhang L., Carpita N.,
RA Freeling M., Gingle A., Hash C., Keller B., Klein P., Kresovich S.,
RA Mccann M., Ming R., Peterson D., Rahman M., Ware D., Westhoff P., Mayer K.,
RA Messing J., Sims D., Jenkins J., Shu S., Rokhsar D.;
RT "WGS assembly of Sorghum bicolor.";
RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PROSITE-ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class III subfamily.
CC {ECO:0000256|ARBA:ARBA00010338}.
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DR EMBL; CM000760; EER94065.1; -; Genomic_DNA.
DR EMBL; CM000760; KXG38315.1; -; Genomic_DNA.
DR EMBL; CM000760; OQU91621.1; -; Genomic_DNA.
DR RefSeq; XP_002467067.1; XM_002467022.1.
DR AlphaFoldDB; C5WYD4; -.
DR STRING; 4558.C5WYD4; -.
DR EnsemblPlants; EER94065; EER94065; SORBI_3001G217200.
DR EnsemblPlants; KXG38315; KXG38315; SORBI_3001G217200.
DR EnsemblPlants; OQU91621; OQU91621; SORBI_3001G217200.
DR Gramene; EER94065; EER94065; SORBI_3001G217200.
DR Gramene; KXG38315; KXG38315; SORBI_3001G217200.
DR Gramene; OQU91621; OQU91621; SORBI_3001G217200.
DR eggNOG; ENOG502QRJM; Eukaryota.
DR HOGENOM; CLU_012517_0_0_1; -.
DR InParanoid; C5WYD4; -.
DR OMA; SEWADFH; -.
DR Proteomes; UP000000768; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR CDD; cd14686; bZIP; 1.
DR CDD; cd00086; homeodomain; 1.
DR CDD; cd08875; START_ArGLABRA2_like; 1.
DR Gene3D; 3.30.530.20; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR044830; HD-Zip_III.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR013978; MEKHLA.
DR InterPro; IPR023393; START-like_dom_sf.
DR InterPro; IPR002913; START_lipid-bd_dom.
DR PANTHER; PTHR45950; HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14; 1.
DR PANTHER; PTHR45950:SF10; HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF08670; MEKHLA; 1.
DR Pfam; PF01852; START; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00234; START; 1.
DR SUPFAM; SSF55961; Bet v1-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS50848; START; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Homeobox {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW ProRule:PRU00108}; Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 22..86
FT /note="Homeobox"
FT /evidence="ECO:0000259|PROSITE:PS50071"
FT DOMAIN 154..382
FT /note="START"
FT /evidence="ECO:0000259|PROSITE:PS50848"
FT DNA_BIND 24..87
FT /note="Homeobox"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00108"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 92..130
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 838 AA; 91985 MW; 33C2CB5915177205 CRC64;
MAAAVAMRSG SSDGGGGYEK GGMDTGKYVR YTPEQVETLE RVYAECPKPS SARRQQLLRE
CPILSNIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL
VHENAYMKQQ LQNPSLANDA SCDSNVTAPA NLRDASNPSG LLSIAEETLT EFLSKATGTA
IDWVQMPGMK PGPDSFGIVT ISHGGRGVAA RACGLVNLEP TKIVEILKDR PSWFRDCRSL
EVFTMLPAGN GGTIELVYMQ MYAPTTLVPA RDFWTLRYTT TMEDGSLVVC ERSLSGSGDG
QSAATAQQFV RAEMLPSGYL VRQCEGGGSI VRIVDHLDLD AWSVPEVLRP LYESSRVVAQ
KMTTAALRHL RQIAQETSGE VVYAMGRQPA VLRTFSQRLS RGFNDAISGF NDDGWSIMAG
DGIEDVIIAC NSKKIRSGSN PATAFGAPGG IICAKASMLL QSVPPAVLVR FLREHRSEWA
DYNFDAYSAS ALKTSPCSLP GLRPMRFSGS QIIMPLAHTV ENEEILEVVR LEGQTLTHDE
GLLSRDIHLL QLCTGIDEKS MGSCFQLVFA PIDELFPDDA PLISSGFRVI PLDIKTDGLS
SGRTLDLASS LEVGATTQQA SADGSQDACN LRSVLTIAFQ FPYEIHLQDT VAAMARQYVR
SIVSAVQRVS MAISPSQSGL NTGQKIISGF PEAATLVRWI CQSYRYHMGV DLVSHSDQAG
ESLLRMFWDH QDAVLCCSFK EKPVFTFGNQ MGIDMLETTL IALQDLTLDK IFDEPGRKAL
HAEVPKLMEQ GYAYLPAGVC LSGMGRHVSY EEAVAWKVLG EDGNVHCLAF CFVNWSFV
//
