ID C5X3A8_SORBI Unreviewed; 756 AA.
AC C5X3A8;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 77.
DE RecName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 {ECO:0008006|Google:ProtNLM};
GN ORFNames=SORBI_3002G389800 {ECO:0000313|EMBL:EER97614.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER97614.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EER97614.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000761; EER97614.1; -; Genomic_DNA.
DR RefSeq; XP_002461093.1; XM_002461048.1.
DR AlphaFoldDB; C5X3A8; -.
DR STRING; 4558.C5X3A8; -.
DR EnsemblPlants; EER97614; EER97614; SORBI_3002G389800.
DR GeneID; 8083720; -.
DR Gramene; EER97614; EER97614; SORBI_3002G389800.
DR KEGG; sbi:8083720; -.
DR eggNOG; KOG1000; Eukaryota.
DR HOGENOM; CLU_000315_33_3_1; -.
DR InParanoid; C5X3A8; -.
DR OMA; RIMICDE; -.
DR OrthoDB; 318617at2759; -.
DR Proteomes; UP000000768; Chromosome 2.
DR GO; GO:0043596; C:nuclear replication fork; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IBA:GO_Central.
DR GO; GO:0031297; P:replication fork processing; IBA:GO_Central.
DR CDD; cd18010; DEXHc_HARP_SMARCAL1; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR InterPro; IPR010003; HARP_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR PANTHER; PTHR45766; DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER; 1.
DR PANTHER; PTHR45766:SF3; SWI_SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS51467; HARP; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768}.
FT DOMAIN 112..185
FT /note="HARP"
FT /evidence="ECO:0000259|PROSITE:PS51467"
FT DOMAIN 225..397
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 517..675
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 36..81
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 669..756
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 669..748
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 756 AA; 82742 MW; D40568131D3649A0 CRC64;
MAGLSGGGGW GGYCDDDDWG LSAEQLDQME RDAIRQLAER KASASAASTA PVPASPLGAT
SPLPSRATAP AAAVSSPLGG NHPAARASLE ARFGTVEALS PSRNAVNNSQ GSSPKISVHL
FLHSSGMIAA RFPYNQLLVD AFRRTPKASW NAKERVWMFP PSSLAIVEDF PRSVSGLAVE
VHKLDPLVQR ALDAALRSKD LRGLYDRIPP NLESQLMPFQ REGIGFVLQH GGRALIADEM
GLGKTVQAIA VASCLRDAWP VLVISPSSLR LHWATAIQSW LNIPMEDILV VLPHTGGSHK
AGFRVVYSNT KGDFHLDGVF NVISYDVVPK IQSTLLDLDF KIVIADESHF MKNGQAKRTV
ASLPVLQKAQ YVVLLSGTPA LSRPIELFTQ MQALYPTVYK NVNEYGNRYC KGGFFGLYQG
ASNHEELHNL MKATVMIRRL KKDVLSQLPV KRRQQVFLDL SEKDVKNVRA LFIELETLKI
KIESSDSKET IDSLRFAYQN IVNKIYTDSA VAKIPAVLDF LGTMIEAGCK FLIFAHHQPM
IDAIEQHLSK KKVKCIKIDG KTPLTTRQTL VTSFQENDDI KAAVLSIKAG GYGITLTAAS
TVIFAELSWT PGDIIQAEDR AHRIGQVSSV NVYYLLANGT ADDLMWDSVQ GKLENLGQML
DGQEKTLDVS QIDSRPSPSK SKQQKTLDGL GPSPSKQQKT LDGFLKRPNT STSMELDRLG
PSPSKQQKTL DGFLKRPNTS TSMEEGMPSP STKRRI
//
