ID C5Y9D8_SORBI Unreviewed; 415 AA.
AC C5Y9D8;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 67.
DE RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SORBI_3006G100000 {ECO:0000313|EMBL:EES10908.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES10908.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES10908.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; CM000765; EES10908.1; -; Genomic_DNA.
DR RefSeq; XP_002446580.1; XM_002446535.1.
DR AlphaFoldDB; C5Y9D8; -.
DR STRING; 4558.C5Y9D8; -.
DR EnsemblPlants; EES10908; EES10908; SORBI_3006G100000.
DR GeneID; 8057442; -.
DR Gramene; EES10908; EES10908; SORBI_3006G100000.
DR KEGG; sbi:8057442; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_019802_0_0_1; -.
DR InParanoid; C5Y9D8; -.
DR OMA; SSRSYIC; -.
DR OrthoDB; 371664at2759; -.
DR Proteomes; UP000000768; Chromosome 6.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 1.
DR PANTHER; PTHR45717; OS12G0527900 PROTEIN; 1.
DR PANTHER; PTHR45717:SF4; PPR_LONG DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF13812; PPR_3; 1.
DR PROSITE; PS51375; PPR; 2.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 161..195
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 196..230
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 415 AA; 45936 MW; D40B68375CDAF7DB CRC64;
MAALLTRAGA RLKRSGSGFH LRSVLAGHGL FSSEAATTAA PAASVDDRAV AVAATGEEDG
DDLRSRIFRL GLAKRSATAA LDKWSGEGRA APAAELRRIA RDLSRVRRYK HALEVADWMK
THHESDLSES DYGMRIDLIT KVFGASAAED FFEKLPPGAK SLEAYTALLH SYGRSKMTDK
AERLFERMKD ANLSMDALVY NEMMTLYISV GELDKVEIIA EELKRQNVSP DLFTYNLRVS
AAAASMDLEG FKGILDEMSK DPNSKEGWTL YRNLASVYVD ASQLVGSGNS LVEAEAKISQ
REWITYDFLV ILHAGLGNQE RIKDIWKSMV MTSQRMTSRN YICVISSYLM CGQLKDAGEI
VDQWQRSKAP EFDISACNRL LDALLSAGLT DTADRFRELM LQKSCILTSR ATVVE
//
