ID C5YVG5_SORBI Unreviewed; 474 AA.
AC C5YVG5;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 24-JAN-2024, entry version 65.
DE RecName: Full=Ninja-family protein {ECO:0000256|RuleBase:RU369029};
DE AltName: Full=ABI-binding protein {ECO:0000256|RuleBase:RU369029};
GN ORFNames=SORBI_3009G228700 {ECO:0000313|EMBL:EES18661.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES18661.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES18661.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
CC -!- FUNCTION: Acts as a negative regulator of abscisic acid (ABA) response.
CC {ECO:0000256|RuleBase:RU369029}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|RuleBase:RU369029}.
CC -!- SIMILARITY: Belongs to the Ninja family.
CC {ECO:0000256|ARBA:ARBA00006081, ECO:0000256|RuleBase:RU369029}.
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DR EMBL; CM000768; EES18661.1; -; Genomic_DNA.
DR RefSeq; XP_002440231.1; XM_002440186.1.
DR AlphaFoldDB; C5YVG5; -.
DR STRING; 4558.C5YVG5; -.
DR EnsemblPlants; EES18661; EES18661; SORBI_3009G228700.
DR GeneID; 8063578; -.
DR Gramene; EES18661; EES18661; SORBI_3009G228700.
DR KEGG; sbi:8063578; -.
DR eggNOG; ENOG502QSTR; Eukaryota.
DR HOGENOM; CLU_049096_0_0_1; -.
DR InParanoid; C5YVG5; -.
DR OMA; PVMFGYP; -.
DR OrthoDB; 1206531at2759; -.
DR Proteomes; UP000000768; Chromosome 9.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0009867; P:jasmonic acid mediated signaling pathway; IBA:GO_Central.
DR GO; GO:0045892; P:negative regulation of DNA-templated transcription; IBA:GO_Central.
DR InterPro; IPR031307; Ninja_fam.
DR InterPro; IPR012463; Ninja_motif.
DR InterPro; IPR032308; TDBD.
DR PANTHER; PTHR31413; AFP HOMOLOG 2; 1.
DR PANTHER; PTHR31413:SF12; AFP HOMOLOG 2; 1.
DR Pfam; PF07897; EAR; 1.
DR Pfam; PF16135; TDBD; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|RuleBase:RU369029};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768}.
FT DOMAIN 2..44
FT /note="Ethylene-responsive binding factor-associated
FT repression"
FT /evidence="ECO:0000259|Pfam:PF07897"
FT DOMAIN 427..448
FT /note="Tify"
FT /evidence="ECO:0000259|Pfam:PF16135"
FT REGION 1..251
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 334..370
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 450..474
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 59..92
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 101..136
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 145..177
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 206..222
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 229..251
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 452..474
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 474 AA; 49384 MW; 46999D5D0875CED6 CRC64;
MDDDNGLELS LGLSLGGSSG KAKARDAPLE PKAEPQVEES SSKGGSQTPD APFGKFYQKS
AENQEQNSKQ RHSPVAQQFG NFWGQPGSSS GPVVDGSIEP VSHQPQLSSY QDGRMPNNSG
NNSEEQKPVS SNRKLSEEMN FQKKHQTASD QPDAFSKSSD GGAKNAPISI STDDGSTGEN
EDVAESEAEG SNSWLVAQRE DSAKGSVVNK GSDRKRSADD AAVGFQGKRQ PSFSGSESSS
GKLTPGNPLS MQASNAVAVP YQVPAQVSGP PTITNAPNFH PVCTVQLRPP TNGGLTVQTM
GNASQVAFGY PAVQLPTLET SSSWAFGAPP QAVSSFTAKE QTGTKQADDG KKPQEAGASS
SAHAEDEKKA DRGLSLMGSA IRPGIAPNVK FGGSGSYPDL PWVSTNGAGP NGRTISGVTY
KFGRNEVKIV CACHGTHMSP EEFMRHASAD APAQENSATL PAFPVGNQAT SAEN
//
