ID C6XTJ9_PEDHD Unreviewed; 294 AA.
AC C6XTJ9;
DT 22-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 22-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 85.
DE SubName: Full=Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ACU05777.1};
GN OrderedLocusNames=Phep_3586 {ECO:0000313|EMBL:ACU05777.1};
OS Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457
OS / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3).
OC Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
OC Sphingobacteriaceae; Pedobacter.
OX NCBI_TaxID=485917 {ECO:0000313|EMBL:ACU05777.1, ECO:0000313|Proteomes:UP000000852};
RN [1] {ECO:0000313|EMBL:ACU05777.1, ECO:0000313|Proteomes:UP000000852}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 /
RC NCIMB 9290 / NRRL B-14731 / HIM 762-3
RC {ECO:0000313|Proteomes:UP000000852};
RX PubMed=21304637; DOI=10.4056/sigs.22138;
RA Han C., Spring S., Lapidus A., Del Rio T.G., Tice H., Copeland A.,
RA Cheng J.F., Lucas S., Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S.,
RA Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K.,
RA Land M., Hauser L., Chang Y.J., Jeffries C.C., Saunders E., Chertkov O.,
RA Brettin T., Goker M., Rohde M., Bristow J., Eisen J.A., Markowitz V.,
RA Hugenholtz P., Kyrpides N.C., Klenk H.P., Detter J.C.;
RT "Complete genome sequence of Pedobacter heparinus type strain (HIM 762-
RT 3).";
RL Stand. Genomic Sci. 1:54-62(2009).
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DR EMBL; CP001681; ACU05777.1; -; Genomic_DNA.
DR RefSeq; WP_015809386.1; NZ_AQGK01000001.1.
DR AlphaFoldDB; C6XTJ9; -.
DR STRING; 485917.Phep_3586; -.
DR KEGG; phe:Phep_3586; -.
DR eggNOG; COG0662; Bacteria.
DR eggNOG; COG2207; Bacteria.
DR HOGENOM; CLU_000445_88_3_10; -.
DR OrthoDB; 1410704at2; -.
DR Proteomes; UP000000852; Chromosome.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 2.
DR Gene3D; 2.60.120.10; Jelly Rolls; 1.
DR InterPro; IPR013096; Cupin_2.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR018060; HTH_AraC.
DR InterPro; IPR018062; HTH_AraC-typ_CS.
DR InterPro; IPR014710; RmlC-like_jellyroll.
DR InterPro; IPR011051; RmlC_Cupin_sf.
DR PANTHER; PTHR43280; ARAC-FAMILY TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR43280:SF6; RCS-SPECIFIC HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RCLR; 1.
DR Pfam; PF07883; Cupin_2; 1.
DR Pfam; PF12833; HTH_18; 1.
DR SMART; SM00342; HTH_ARAC; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF51182; RmlC-like cupins; 1.
DR PROSITE; PS00041; HTH_ARAC_FAMILY_1; 1.
DR PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000000852}.
FT DOMAIN 193..291
FT /note="HTH araC/xylS-type"
FT /evidence="ECO:0000259|PROSITE:PS01124"
SQ SEQUENCE 294 AA; 34170 MW; DEF9D1453CD780E0 CRC64;
MKDFIEQVLK ATTSTITLAE GSAYHALNNF HNHQEIELVY VRSGEGTFSI GHTSKRISSG
AMILIGTNIP HMFKFESNRY YDYAMKHAKR IVPLQLLTLH FDPYKLGNDF LKLPENIVIK
DLLDKAKKGL LIPEQTKLAV IEYLKKIESS LHYEQLPLVL QLLNKIGVSE EIVGLSAYNE
KKTFKKIDET RLTMVYLYTM DNFYKEIKLE QIANVIHMVP NAFCHYFKSR TGRTYFDFLI
AVRIEHACKL LRESNDSVNS VCRDSGFSNL SNFNRYFKLQ TEKSPLEYRR SFRN
//
