ID C9L117_9BACE Unreviewed; 494 AA.
AC C9L117;
DT 24-NOV-2009, integrated into UniProtKB/TrEMBL.
DT 24-NOV-2009, sequence version 1.
DT 24-JAN-2024, entry version 47.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:EEX44016.1};
GN Name=rpoN {ECO:0000313|EMBL:EEX44016.1};
GN ORFNames=BACFIN_08293 {ECO:0000313|EMBL:EEX44016.1};
OS Bacteroides finegoldii DSM 17565.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
OC Bacteroides.
OX NCBI_TaxID=483215 {ECO:0000313|EMBL:EEX44016.1, ECO:0000313|Proteomes:UP000003768};
RN [1] {ECO:0000313|EMBL:EEX44016.1, ECO:0000313|Proteomes:UP000003768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 17565 {ECO:0000313|EMBL:EEX44016.1,
RC ECO:0000313|Proteomes:UP000003768};
RA Weinstock G., Sodergren E., Clifton S., Fulton L., Fulton B., Courtney L.,
RA Fronick C., Harrison M., Strong C., Farmer C., Delahaunty K., Markovic C.,
RA Hall O., Minx P., Tomlinson C., Mitreva M., Nelson J., Hou S., Wollam A.,
RA Pepin K.H., Johnson M., Bhonagiri V., Nash W.E., Warren W., Chinwalla A.,
RA Mardis E.R., Wilson R.K.;
RL Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EEX44016.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; ABXI02000082; EEX44016.1; -; Genomic_DNA.
DR RefSeq; WP_007756776.1; NZ_GG688330.1.
DR AlphaFoldDB; C9L117; -.
DR GeneID; 61622890; -.
DR eggNOG; COG1508; Bacteria.
DR HOGENOM; CLU_020569_0_1_10; -.
DR Proteomes; UP000003768; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 115..312
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 337..494
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 48..78
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 92..111
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 58..74
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 494 AA; 56666 MW; B8778A0BFD057D3C CRC64;
MAQGSRQIQS QAQQQIQTLS PQQILVVKLL ELPAVELEDR IHAELLENPA LEEGKEENVA
DEYSDGDTSG EGMENDANEY DSLSDYLTED DIPDYKLQEN NRSKDEQAED IPFSDSTSFY
EILKEQLRER NLTEHQHELV EYLIGSLDDD GLLRKSLESI CDELAIYAGI ESTEEELEEA
LCILQDFDPA GIGARDLQEC LLIQIRRKKE EGMNPAPILD IEERIIRDCY EEFTRKHWEK
IIKKLDVDEE TFNEAISEIT KLNPRPGASL GEAIGRNLQQ IVPDFIVETY DDGTINVSLN
NRNVPELRMS RDFTEMVEEH TKNKANQSKE SKEAMMFLKQ KMDAAQGFID AVKQRQNTLM
TTMQAIIDLQ RPFFLEGDES LLKPMILKDV AERTGLDIST ISRVSNSKYA QTNFGIYPLK
FFFSDGYTTE DGEEMSVREI RKILKECIDG EDKKKPLTDD ELADILKEKG YPIARRTVAK
YRQQLNIPVA RLRK
//
