ID C9R8T3_AMMDK Unreviewed; 453 AA.
AC C9R8T3;
DT 24-NOV-2009, integrated into UniProtKB/TrEMBL.
DT 24-NOV-2009, sequence version 1.
DT 24-JAN-2024, entry version 67.
DE SubName: Full=RNA polymerase, sigma 54 subunit, RpoN {ECO:0000313|EMBL:ACX52712.1};
GN OrderedLocusNames=Adeg_1618 {ECO:0000313|EMBL:ACX52712.1};
OS Ammonifex degensii (strain DSM 10501 / KC4).
OC Bacteria; Bacillota; Clostridia; Thermoanaerobacterales;
OC Thermoanaerobacteraceae; Ammonifex.
OX NCBI_TaxID=429009 {ECO:0000313|EMBL:ACX52712.1, ECO:0000313|Proteomes:UP000002620};
RN [1] {ECO:0000313|EMBL:ACX52712.1, ECO:0000313|Proteomes:UP000002620}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 10501 / KC4 {ECO:0000313|Proteomes:UP000002620};
RG US DOE Joint Genome Institute;
RA Kerfeld C., Goodner B., Huber H., Stetter K., Lucas S., Copeland A.,
RA Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L.,
RA Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F.,
RA Land M., Hauser L., Kyrpides N., Ovchinnikova G., Richardson P.;
RT "Complete sequence of chromosome of Ammonifex degensii KC4.";
RL Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; CP001785; ACX52712.1; -; Genomic_DNA.
DR RefSeq; WP_015739589.1; NC_013385.1.
DR AlphaFoldDB; C9R8T3; -.
DR STRING; 429009.Adeg_1618; -.
DR KEGG; adg:Adeg_1618; -.
DR eggNOG; COG1508; Bacteria.
DR HOGENOM; CLU_020569_1_1_9; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000002620; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00717; SIGMA54_1; 1.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000002620};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 99..279
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 294..451
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 453 AA; 50920 MW; D23B7D0B5E122CD5 CRC64;
MVTKADIRLE TAQKLAFRPE LQQAVAVLQF STQELWQYVQ QQLTENPLLE LKEEGEGGEP
PEEEASEDSW VDYLCDASDL GLSQQEPASS PEPVPVAPGP SLYEHLLQQL AFLPLNSTER
AVAEFLAGNL DQDGYLRLPL AEAASLLGIS EEAVARGLKV LQSLEPPGVG ARDLRECLLL
QLERSHPEDH LARKLVGEHL EELAEGEWAK LVRKLGVSQE ELDRAVERIR QLNPRPGSNF
GSNWVEYVVP DIVVQEVEGD YEVLLNESVY PRLVINSTYR DLLRHPQLGP EAKTFLQQRL
KQALWLIKNL EQRRLTLYRV AVALVEKQRS FFDQGLSGLK PLTLREIAEE IGVHESTVSR
AIANKYLQCS RGIFPLRFFF ASGVSSSRGQ EVAAQAVKWL IKQLIDKEDP AAPLSDQAIA
RELKRQGIEL SRRTVAKYRM EMGIPNAAKR KSQ
//
