ID D0MKS9_RHOM4 Unreviewed; 388 AA.
AC D0MKS9;
DT 15-DEC-2009, integrated into UniProtKB/TrEMBL.
DT 15-DEC-2009, sequence version 1.
DT 27-MAR-2024, entry version 56.
DE SubName: Full=Transposase, IS605 OrfB family {ECO:0000313|EMBL:ACY49743.1};
GN OrderedLocusNames=Rmar_2881 {ECO:0000313|EMBL:ACY49743.1};
OS Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) (Rhodothermus
OS obamensis).
OG Plasmid pRMAR01 {ECO:0000313|EMBL:ACY49743.1,
OG ECO:0000313|Proteomes:UP000002221}.
OC Bacteria; Rhodothermota; Rhodothermia; Rhodothermales; Rhodothermaceae;
OC Rhodothermus.
OX NCBI_TaxID=518766 {ECO:0000313|EMBL:ACY49743.1, ECO:0000313|Proteomes:UP000002221};
RN [1] {ECO:0000313|EMBL:ACY49743.1, ECO:0000313|Proteomes:UP000002221}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 43812 / DSM 4252 / R-10
RC {ECO:0000313|Proteomes:UP000002221};
RC PLASMID=pRMAR01 {ECO:0000313|EMBL:ACY49743.1};
RX PubMed=21304669; DOI=10.4056/sigs.46736;
RA Nolan M., Tindall B.J., Pomrenke H., Lapidus A., Copeland A.,
RA Glavina Del Rio T., Lucas S., Chen F., Tice H., Cheng J.F., Saunders E.,
RA Han C., Bruce D., Goodwin L., Chain P., Pitluck S., Ovchinikova G.,
RA Pati A., Ivanova N., Mavromatis K., Chen A., Palaniappan K., Land M.,
RA Hauser L., Chang Y.J., Jeffries C.D., Brettin T., Goker M., Bristow J.,
RA Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P.,
RA Detter J.C.;
RT "Complete genome sequence of Rhodothermus marinus type strain (R-10).";
RL Stand. Genomic Sci. 1:283-291(2009).
CC -!- SIMILARITY: In the C-terminal section; belongs to the transposase 35
CC family. {ECO:0000256|ARBA:ARBA00008761}.
CC -!- SIMILARITY: In the N-terminal section; belongs to the transposase 2
CC family. {ECO:0000256|ARBA:ARBA00011044}.
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DR EMBL; CP001808; ACY49743.1; -; Genomic_DNA.
DR RefSeq; WP_012845353.1; NC_013502.1.
DR AlphaFoldDB; D0MKS9; -.
DR KEGG; rmr:Rmar_2881; -.
DR eggNOG; COG0675; Bacteria.
DR HOGENOM; CLU_032903_3_2_10; -.
DR OrthoDB; 1551477at2; -.
DR Proteomes; UP000002221; Plasmid pRMAR01.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0032196; P:transposition; IEA:UniProtKB-KW.
DR InterPro; IPR010095; Cas12f1-like_TNB.
DR InterPro; IPR001959; Transposase.
DR NCBIfam; NF040570; guided_TnpB; 1.
DR NCBIfam; TIGR01766; IS200/IS605 family accessory protein TnpB-like domain; 1.
DR PANTHER; PTHR30405:SF11; TNPB-LIKE PROTEIN MJ1635; 1.
DR PANTHER; PTHR30405; TRANSPOSASE; 1.
DR Pfam; PF01385; OrfB_IS605; 1.
DR Pfam; PF07282; OrfB_Zn_ribbon; 1.
PE 3: Inferred from homology;
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Plasmid {ECO:0000313|EMBL:ACY49743.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000002221};
KW Transposition {ECO:0000256|ARBA:ARBA00022578}.
FT DOMAIN 158..249
FT /note="Probable transposase IS891/IS1136/IS1341"
FT /evidence="ECO:0000259|Pfam:PF01385"
FT DOMAIN 280..347
FT /note="Cas12f1-like TNB"
FT /evidence="ECO:0000259|Pfam:PF07282"
SQ SEQUENCE 388 AA; 43363 MW; 29729AFD0A1F8F55 CRC64;
MQTLTVKCKL VLSKEQREAL DTTMRAFAAA CNDAIAVGRR LNTASNIRIH RVCYSDLRAR
HGLTANLAVR AIARAAGILK VKKRQCSTVR PTSIDYDARI FSFREADWTV SLSTVQGRIR
VPLHIGDYQR TLLGSRKPTS AVVWKTRQGD YYIGIHINVE TPPPEDEHGW IGVDLGIVNI
ATLDDGTAFS GDQIERVRAR YERTRRSLQR KGTRGAKRVL KRLSGRERRF QQAINHTISR
RIVDRAIAEG KGVRLEDLSG IRKSVRVRKS QRRRIHRWAF YDLRIKIAYK CALAGVPFEL
IDPRYTSQRC PVCGHTERAN RKSQSKFVCR SCGLEANADV VGAINIALGG AVNHPEVALV
DVETVLHGQD TGLRRRAATS PPSLGVGS
//
