ID D1BUK4_XYLCX Unreviewed; 1441 AA.
AC D1BUK4;
DT 19-JAN-2010, integrated into UniProtKB/TrEMBL.
DT 19-JAN-2010, sequence version 1.
DT 27-MAR-2024, entry version 81.
DE SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACZ29245.1};
GN OrderedLocusNames=Xcel_0206 {ECO:0000313|EMBL:ACZ29245.1};
OS Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 /
OS XIL07).
OC Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
OC Promicromonosporaceae; Xylanimonas.
OX NCBI_TaxID=446471 {ECO:0000313|EMBL:ACZ29245.1, ECO:0000313|Proteomes:UP000002255};
RN [1] {ECO:0000313|Proteomes:UP000002255}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 15894 / CECT 5975 / LMG 20990 / XIL07
RC {ECO:0000313|Proteomes:UP000002255};
RG US DOE Joint Genome Institute (JGI-PGF);
RA Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N.,
RA Mikhailova N., Foster B., Clum A., Brettin T., Detter J.C., Han C.,
RA Larimer F., Land M., Hauser L., Markowitz V., Cheng J.F., Hugenholtz P.,
RA Woyke T., Wu D., Gehrich-Schroeter G., Schneider S., Pukall S.R.,
RA Klenk H.P., Eisen J.A.;
RT "The complete chromosome of Xylanimonas cellulosilytica DSM 15894.";
RL Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ACZ29245.1, ECO:0000313|Proteomes:UP000002255}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 15894 / CECT 5975 / LMG 20990 / XIL07
RC {ECO:0000313|Proteomes:UP000002255};
RX PubMed=21304672; DOI=10.4056/sigs.571102;
RA Foster B., Pukall R., Abt B., Nolan M., Glavina Del Rio T., Chen F.,
RA Lucas S., Tice H., Pitluck S., Cheng J.-F., Chertkov O., Brettin T.,
RA Han C., Detter J.C., Bruce D., Goodwin L., Ivanova N., Mavromatis K.,
RA Pati A., Mikhailova N., Chen A., Palaniappan K., Land M., Hauser L.,
RA Chang Y.-J., Jeffries C.D., Chain P., Rohde M., Goeker M., Bristow J.,
RA Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.-P.,
RA Lapidus A.;
RT "Complete genome sequence of Xylanimonas cellulosilytica type strain
RT (XIL07).";
RL Stand. Genomic Sci. 2:1-8(2010).
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CP001821; ACZ29245.1; -; Genomic_DNA.
DR STRING; 446471.Xcel_0206; -.
DR KEGG; xce:Xcel_0206; -.
DR eggNOG; COG1595; Bacteria.
DR HOGENOM; CLU_251842_0_0_11; -.
DR OrthoDB; 4990598at2; -.
DR Proteomes; UP000002255; Chromosome.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.10.10.1320; Anti-sigma factor, zinc-finger domain; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR041916; Anti_sigma_zinc_sf.
DR InterPro; IPR039425; RNA_pol_sigma-70-like.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR027383; Znf_put.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR43133:SF58; BLL3014 PROTEIN; 1.
DR PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF13490; zf-HC2; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000002255};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 35..103
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 203..237
FT /note="Putative zinc-finger"
FT /evidence="ECO:0000259|Pfam:PF13490"
FT REGION 1313..1401
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1315..1354
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1441 AA; 142624 MW; 01215FF7D3743B26 CRC64;
MTDVYIESGD QPSSPSDAEL ILEVRGGDLD AYGALYARHA GAARRLAQSY VRNAADADDV
VADAFARVLR VLQSGRGPDQ MFRAYLFTVV KNVAIEVAKG HRRMQPTDDE ATFETALFSE
VSSEDPTLAG FEKTVVSRAY RNLPERWQAV LWYTEVEGYT PAQIAPVLGL TANGVSALAY
RAREGLRVGY LQEHLSGFTA DGCRTVNPLL GGYVRGSLAS REIAKVDAHL KTCGDCRTLV
LELSDVAHGM RGVIAPLVLG GLGLGLVSAL PLGALVGAGV TSAAGAAGGA GVVGGAATGA
TVTGSFGAAG SAGTAGAAAG TAGAAGTAGA TAGVGAGAAG ATGAATGAVA GTAGATTAGA
AAASSGAGSI AAGLGAATAS VATSAGSAAA ATGTTAVTAA TTAASSTAVA STLAASTAGA
VVGTSSVAAA ASAVAVAAVG VVTVLHALAP SSGDIPTPQA TSIVTTLPGL QAPAEIGPVE
PTPQVSPSQL PAFAQAPVVA LVDPAKLAVA PVSTGTLQPR VPQRVKLTVA NTGEQTAVGT
TVRFDLADGL SPVFASSTGA RGAPIAGLPL DAAALPCRPA DDDADVVCRL GDVPGGSTTT
FAFDVVARNG GTYDITGQVW ASGLKPSAIA LVPAVVDHYG AELTAELGTL DDLANPGVGT
LPVSVVNSGD EPAAEGWSVD VTLPDGLTLA GVEGGLDCTT DPQAAGHLTC VAANPATLRP
GVGAFASLRV LAPATPTNGT LTARAIPVAA DGGHVVAGTG AINVQAPWAG AAPIGVTTWC
AATGNLATAD VVVGGTFVNT TSQTVTARLE AAGSAAVGRA LAPGESVRLA LHDGARVPAG
TATWILSTTV AGREYTTSVG GGDVAATDCY VPEWDVTTAV VPRNEAGQIR LTGTITNRTT
EAMRVDLRAA GRTSAPVTVA AGESATLVLD TQTRKLPAGV ARFGLSRWVT DVDGDQPRAA
VEPEKPATVR YAAAVLAPAI GGEGQASYPG ACVYDPASET SSRTVAITLD NRGSTLPVAF
TVGTAAVTVP AGETRTVEQR VVAGTAGLDV VADGRSLGTV PVQVASCATF AWPADVTAAA
QARCVPAGGP DSRPSVAVTV SDATGRSYEA RTRLVRGTWT GPVAVPGGGS ASLAVDPGSG
LRVRGGDVVV ELARTIEGKR YTAEKTVGYD AVSCVVRDPG ARLELGDVVV NQSGWWPTSS
RTVGVVLDNT ASNVPVRFVV TGGPDGGTTQ RTVRPGQAQT VDLGTVVGRT GASISVRTDG
WSTTLVVDPF TGTPGWCAPA WNGGTEARGG YTAGDVVSYG PTSYRYLGAA QPASGGNAGT
GSASPTGPAT TPGTTGTAAG ADAASSQTSQ GTIDGADRSE ERSDDGSAVT GRNGSVTGRD
GDRDTANTRW GGRWSGGGVS RSVGQAVPLF GSWVTPPPRS DVWQAAGACE WRWPGGAQTT
P
//
