ID D2QLL9_SPILD Unreviewed; 875 AA.
AC D2QLL9;
DT 02-MAR-2010, integrated into UniProtKB/TrEMBL.
DT 02-MAR-2010, sequence version 1.
DT 27-MAR-2024, entry version 83.
DE SubName: Full=Transcriptional regulator, NifA subfamily, Fis Family {ECO:0000313|EMBL:ADB40309.1};
GN OrderedLocusNames=Slin_4327 {ECO:0000313|EMBL:ADB40309.1};
OS Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896 / Claus 1).
OC Bacteria; Bacteroidota; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.
OX NCBI_TaxID=504472 {ECO:0000313|EMBL:ADB40309.1, ECO:0000313|Proteomes:UP000002028};
RN [1] {ECO:0000313|Proteomes:UP000002028}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 33905 / DSM 74 / LMG 10896
RC {ECO:0000313|Proteomes:UP000002028};
RG US DOE Joint Genome Institute (JGI-PGF);
RA Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K.,
RA Mikhailova N., Ovchinnikova G., Saunders E., Brettin T., Detter J.C.,
RA Han C., Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F.,
RA Hugenholtz P., Woyke T., Wu D., Tindal B., Schutze A., Schneider S.,
RA Goker M., Klenk H.-P., Eisen J.A.;
RT "The complete chromosome of Spirosoma linguale DSM 74.";
RL Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ADB40309.1, ECO:0000313|Proteomes:UP000002028}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 33905 / DSM 74 / LMG 10896
RC {ECO:0000313|Proteomes:UP000002028};
RX PubMed=21304700;
RA Lail K., Sikorski J., Saunders E., Lapidus A., Glavina Del Rio T.,
RA Copeland A., Tice H., Cheng J.-F., Lucas S., Nolan M., Bruce D.,
RA Goodwin L., Pitluck S., Ivanova N., Mavromatis K., Ovchinnikova G.,
RA Pati A., Chen A., Palaniappan K., Land M., Hauser L., Chang Y.-J.,
RA Jeffries C.D., Chain P., Brettin T., Detter J.C., Schuetze A., Rohde M.,
RA Tindall B.J., Goeker M., Bristow J., Eisen J.A., Markowitz V.,
RA Hugenholtz P., Kyrpides N.C., Klenk H.-P., Chen F.;
RT "Complete genome sequence of Spirosoma linguale type strain (1).";
RL Stand. Genomic Sci. 2:176-185(2010).
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DR EMBL; CP001769; ADB40309.1; -; Genomic_DNA.
DR AlphaFoldDB; D2QLL9; -.
DR STRING; 504472.Slin_4327; -.
DR KEGG; sli:Slin_4327; -.
DR eggNOG; COG2203; Bacteria.
DR eggNOG; COG3604; Bacteria.
DR eggNOG; COG4565; Bacteria.
DR HOGENOM; CLU_000445_95_1_10; -.
DR Proteomes; UP000002028; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW.
DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro.
DR GO; GO:0016310; P:phosphorylation; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd17534; REC_DC-like; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.450.40; -; 2.
DR Gene3D; 3.40.50.2300; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR011006; CheY-like_superfamily.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00072; Response_reg; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00065; GAF; 2.
DR SMART; SM00448; REC; 1.
DR SUPFAM; SSF52172; CheY-like; 1.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS50110; RESPONSE_REGULATORY; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Kinase {ECO:0000256|ARBA:ARBA00022777};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Phosphoprotein {ECO:0000256|PROSITE-ProRule:PRU00169};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 40..156
FT /note="Response regulatory"
FT /evidence="ECO:0000259|PROSITE:PS50110"
FT DOMAIN 559..788
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT MOD_RES 90
FT /note="4-aspartylphosphate"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00169"
SQ SEQUENCE 875 AA; 97324 MW; A941846F7924CB43 CRC64;
MLDLQYIGDT KWSSYYLVPL PFINSTNRMV LPSEFIPLPK LLIVEDEFLI ANDLSRMLQK
AGYQVVGTAA SVAEAKAMVT QQTPDIVLLD IFLNDDQTGI DLANWLNEQT VPVPFVFLSA
NLTDSILEVA KVTQSFGFLN KPFREKDVLT TLEIARYRHA HSEEARLRQQ QAVQIAVNNA
IVTIQDRDQL CRAIADQINK LVPFSFLNLR IGLPDEVSFY WLMLAKTDVN TFERVNLAML
LRGEVEEGLI QKLDREAPDR LGEEQGVFTG DAFDQLCERY ITARSCRDNF GVRSLVLFPI
QLKRKAFTTI ILSSIRADGF TQKDYQAVNL IAPQIALALD NLLAYEEIEA RRQTKTTELA
IVNAFQNGKD SHAIIPQVAA IINELMPFDL LAVYRIGRLL ESAAIDMAVQ KQGGVFVAIT
EKDVVPQTLA DQASWKQALA DMETWLVEPA INVGQQFVDI QQRSVVSRFY AEALGLKSSM
YVPIFSKGKP IAALILASKA AYAFTPKDLC TLQDISVELA LALENLSAYE RIKVLSEHLE
QEKTYLAEEI KTSHNFEEII GTSSSMQTVF NAIGQVAPTD YTVLIMGETG TGKELIARAV
HSLSARRDRP VVKINCAALP AQLIESELFG HERGSFTGAT EKRIGKFELA NGGTLFLDEI
GELPLELQAK LLRAIQEKEI ERVGGKGVIL INTRIIAATN RNLQQEVAAG RFRSDLYYRL
NVFPIVVPPL RERQEDILPL TMHFLQKISK KLGKPITNIA NASLQQLLQY PWPGNIRELE
HVLERSSILS QSATLTLAEP LRAATTAFPP FVVQSSEEVK SIDDAMRLAI LAALAKSGNR
IRGTGGAAEL LNIKPTTLEA RMKKLNISAY QQPGS
//
