ID D2SYH4_9ORYZ Unreviewed; 149 AA.
AC D2SYH4;
DT 02-MAR-2010, integrated into UniProtKB/TrEMBL.
DT 02-MAR-2010, sequence version 1.
DT 24-JAN-2024, entry version 59.
DE RecName: Full=Large ribosomal subunit protein uL22c {ECO:0000256|HAMAP-Rule:MF_01331};
GN Name=rpl22 {ECO:0000256|HAMAP-Rule:MF_01331,
GN ECO:0000313|EMBL:ADB07733.1};
OS Oryza officinalis.
OG Plastid; Chloroplast {ECO:0000313|EMBL:ADB07733.1}.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4535 {ECO:0000313|EMBL:ADB07733.1};
RN [1] {ECO:0000313|EMBL:ADB07733.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=19683587; DOI=10.1016/j.ympev.2009.08.007;
RA Tang L., Zou X.H., Achoundong G., Potgieter C., Second G., Zhang D.Y.,
RA Ge S.;
RT "Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from
RT combined analysis of 20 chloroplast fragments.";
RL Mol. Phylogenet. Evol. 54:266-277(2010).
RN [2] {ECO:0000313|EMBL:AGY93932.1}
RP NUCLEOTIDE SEQUENCE.
RA Pilkington S.;
RL Submitted (JUL-2013) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AJP34349.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=26355750; DOI=10.1038/srep13957;
RA Wambugu P.W., Brozynska M., Furtado A., Waters D.L., Henry R.J.;
RT "Relationships of wild and domesticated rices (Oryza AA genome species)
RT based upon whole chloroplast genome sequences.";
RL Sci. Rep. 5:13957-13957(2015).
RN [4] {ECO:0000313|EMBL:QNR01756.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=32880855; DOI=10.1007/s11103-020-01054-3;
RA Zhang W., Sun Y., Liu J., Xu C., Zou X., Chen X., Liu Y., Wu P., Yang X.,
RA Zhou S.;
RT "DNA barcoding of Oryza: conventional, specific, and super barcodes.";
RL Plant Mol. Biol. 0:0-0(2020).
CC -!- FUNCTION: The globular domain of the protein is located near the
CC polypeptide exit tunnel on the outside of the subunit, while an
CC extended beta-hairpin is found that lines the wall of the exit tunnel
CC in the center of the 70S ribosome. {ECO:0000256|HAMAP-Rule:MF_01331,
CC ECO:0000256|RuleBase:RU004009}.
CC -!- FUNCTION: This protein binds specifically to 23S rRNA.
CC {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004009}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit.
CC {ECO:0000256|ARBA:ARBA00011838, ECO:0000256|HAMAP-Rule:MF_01331}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000256|HAMAP-
CC Rule:MF_01331, ECO:0000256|RuleBase:RU004009}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL22 family.
CC {ECO:0000256|ARBA:ARBA00009451, ECO:0000256|HAMAP-Rule:MF_01331,
CC ECO:0000256|RuleBase:RU004005}.
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DR EMBL; FJ908439; ADB07733.1; -; Genomic_DNA.
DR EMBL; KF359910; AGY93932.1; -; Genomic_DNA.
DR EMBL; KM881643; AJP34349.1; -; Genomic_DNA.
DR EMBL; MT726930; QNR01756.1; -; Genomic_DNA.
DR RefSeq; YP_009155828.1; NC_027463.1.
DR AlphaFoldDB; D2SYH4; -.
DR SMR; D2SYH4; -.
DR GeneID; 25016119; -.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR CDD; cd00336; Ribosomal_L22; 1.
DR Gene3D; 3.90.470.10; Ribosomal protein L22/L17; 1.
DR HAMAP; MF_01331_B; Ribosomal_L22_B; 1.
DR InterPro; IPR001063; Ribosomal_uL22.
DR InterPro; IPR005727; Ribosomal_uL22_bac/chlpt-type.
DR InterPro; IPR047867; Ribosomal_uL22_bac/org-type.
DR InterPro; IPR018260; Ribosomal_uL22_CS.
DR InterPro; IPR036394; Ribosomal_uL22_sf.
DR NCBIfam; TIGR01044; rplV_bact; 1.
DR PANTHER; PTHR13501:SF10; 50S RIBOSOMAL PROTEIN L22, CHLOROPLASTIC; 1.
DR PANTHER; PTHR13501; CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED; 1.
DR Pfam; PF00237; Ribosomal_L22; 1.
DR SUPFAM; SSF54843; Ribosomal protein L22; 1.
DR PROSITE; PS00464; RIBOSOMAL_L22; 1.
PE 3: Inferred from homology;
KW Chloroplast {ECO:0000313|EMBL:ADB07733.1};
KW Plastid {ECO:0000313|EMBL:ADB07733.1};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274, ECO:0000256|HAMAP-
KW Rule:MF_01331};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980, ECO:0000256|HAMAP-
KW Rule:MF_01331};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_01331};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730, ECO:0000256|HAMAP-
KW Rule:MF_01331}.
SQ SEQUENCE 149 AA; 17683 MW; 25E0938943E209F2 CRC64;
MTSFKLVKYT PRIKKKKSGL RKLARKVPTD RLLKFERVFK AQKRIHMSVF KVQRVLDEIR
WRYYEETVMI LNLMPYRASY PILKLVYSAA ANATHYRDFD KANLFITKAE VSRSTIMNKF
RPRARGRSSP IKKTMCHITI VLNIVKKSK
//
