ID D3LTM9_9FIRM Unreviewed; 429 AA.
AC D3LTM9;
DT 20-APR-2010, integrated into UniProtKB/TrEMBL.
DT 20-APR-2010, sequence version 1.
DT 24-JAN-2024, entry version 51.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:EFD94568.1};
GN Name=rpoN {ECO:0000313|EMBL:EFD94568.1};
GN ORFNames=HMPREF0889_0645 {ECO:0000313|EMBL:EFD94568.1};
OS Megasphaera genomosp. type_1 str. 28L.
OC Bacteria; Bacillota; Negativicutes; Veillonellales; Veillonellaceae;
OC Megasphaera.
OX NCBI_TaxID=699218 {ECO:0000313|EMBL:EFD94568.1, ECO:0000313|Proteomes:UP000003242};
RN [1] {ECO:0000313|Proteomes:UP000003242}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=28L {ECO:0000313|Proteomes:UP000003242};
RA Madupu R., Durkin A.S., Torralba M., Methe B., Sutton G.G.,
RA Strausberg R.L., Nelson K.E.;
RT "Sequence of Clostridiales genomosp. BVAB3 str. UPII9-5.";
RL Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EFD94568.1}.
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DR EMBL; ADGP01000009; EFD94568.1; -; Genomic_DNA.
DR RefSeq; WP_007390431.1; NZ_ADGP01000009.1.
DR AlphaFoldDB; D3LTM9; -.
DR STRING; 699218.HMPREF0889_0645; -.
DR eggNOG; COG1508; Bacteria.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000003242; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 2.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 66..241
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 272..425
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 429 AA; 49605 MW; 068CC8A44993764D CRC64;
MLSTHLILQQ QVKLTQRQVL AMRVLALPTQ NLHEFIQEKI IENPLLEMEP VSYKTGKEKE
SAALWEKIPD RDLSFEEALL RELRCYQCTP AVREGVRRIV CSLDQHGFFT GDLKALGEAG
HISYEDMRQA LALIQECDPP GVGAASVQES LLLQIKHSEK IPPFGTEAVL REHFTDFLQG
RWDTITAKTG VSMRQLRDIR LFLKPFQPYP ARQYTQRAAY IRPEVEVQAG ENGTFSLRFL
EELPPLTFRK DLYDLYYRAG DKETRCFLAK YRQGFLLLQE ALAYRRASII RVMQYILQVQ
QQFFTRGMAI KPLLQKDIAA VTGLSASTVS RVCRARYMLF QGNVYAFQEF FGRAYACCEE
NEERVSDKFV MKELQTLIAG EDKLRPLSDQ ALCDVLGEQH ITISRRTVTK FRLKLNIPNS
SIRRRRYML
//
