ID D6V863_9BRAD Unreviewed; 307 AA.
AC D6V863;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 57.
DE SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:EFI51423.1};
GN ORFNames=AfiDRAFT_2796 {ECO:0000313|EMBL:EFI51423.1};
OS Afipia sp. 1NLS2.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Nitrobacteraceae; Afipia.
OX NCBI_TaxID=666684 {ECO:0000313|EMBL:EFI51423.1, ECO:0000313|Proteomes:UP000004041};
RN [1] {ECO:0000313|EMBL:EFI51423.1, ECO:0000313|Proteomes:UP000004041}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=1NLS2 {ECO:0000313|EMBL:EFI51423.1,
RC ECO:0000313|Proteomes:UP000004041};
RG US DOE Joint Genome Institute (JGI-PGF);
RA Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L.,
RA Pitluck S., Land M.L., Hauser L., Chang Y.-J., Jeffries C., Prakah O.,
RA Elkins J.G., Brown S.D., Palumbo A.V., Hemme C., Zhou J., Watson D.B.,
RA Jardine P.M., Kostka J.E., Green S.J., Woyke T.J.;
RT "The draft genome of Afipia sp. 1NLS2.";
RL Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: NodD regulates the expression of the nodABCFE genes which
CC encode other nodulation proteins. NodD is also a negative regulator of
CC its own expression. Binds flavonoids as inducers.
CC {ECO:0000256|ARBA:ARBA00003502}.
CC -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC {ECO:0000256|ARBA:ARBA00009437}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EFI51423.1}.
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DR EMBL; ADVZ01000003; EFI51423.1; -; Genomic_DNA.
DR RefSeq; WP_009340141.1; NZ_ADVZ01000003.1.
DR AlphaFoldDB; D6V863; -.
DR eggNOG; COG0583; Bacteria.
DR Proteomes; UP000004041; Unassembled WGS sequence.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd08440; PBP2_LTTR_like_4; 1.
DR Gene3D; 3.40.190.290; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR005119; LysR_subst-bd.
DR InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR30419; HTH-TYPE TRANSCRIPTIONAL REGULATOR YBHD; 1.
DR PANTHER; PTHR30419:SF31; LYSR FAMILY TRANSCRIPTIONAL REGULATOR-RELATED; 1.
DR Pfam; PF00126; HTH_1; 1.
DR Pfam; PF03466; LysR_substrate; 1.
DR PRINTS; PR00039; HTHLYSR.
DR SUPFAM; SSF53850; Periplasmic binding protein-like II; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50931; HTH_LYSR; 1.
PE 3: Inferred from homology;
KW Activator {ECO:0000256|ARBA:ARBA00023159}.
FT DOMAIN 1..60
FT /note="HTH lysR-type"
FT /evidence="ECO:0000259|PROSITE:PS50931"
SQ SEQUENCE 307 AA; 33693 MW; 1BB59C19803C7810 CRC64;
MNVGLRQLKV FLAVAKHGSF SRAAEDIGMS QSAVSLAIRH VETELGVKLL DRTTRNVRLT
TVGETLVATG ARLLNELDTV LRELRDIGVQ HRGTVAMACV PSIARSLMPR CIEHCTAKWP
NVSFAIEDVA AREVVQKAVR GEIEFGISSG LISESELEIH KLMSDPFLLV CRRDDAFAKK
KSVGWSQLAG RRLVMLNNTS GSRQQIVDTL ARLQIQANIV LELAQPSSVL GMVEAGLGVA
VMPEMVAPYK SHPALITRTL TRPAASRDIL LFKRKDRSLS PAAQVVWQTF FELSYNRKTS
APTTRPG
//
