ID D6YRD9_PANVC Unreviewed; 200 AA.
AC D6YRD9;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 57.
DE SubName: Full=Uncharacterized HTH-type transcriptional regulator ydcN {ECO:0000313|EMBL:ADI78572.1};
GN Name=ydcN {ECO:0000313|EMBL:ADI78572.1};
GN OrderedLocusNames=Pvag_pPag30503 {ECO:0000313|EMBL:ADI78572.1};
OS Pantoea vagans (strain C9-1) (Pantoea agglomerans (strain C9-1)).
OG Plasmid pPag3 {ECO:0000313|EMBL:ADI78572.1,
OG ECO:0000313|Proteomes:UP000006631}.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
OC Erwiniaceae; Pantoea.
OX NCBI_TaxID=712898 {ECO:0000313|EMBL:ADI78572.1, ECO:0000313|Proteomes:UP000006631};
RN [1] {ECO:0000313|EMBL:ADI78572.1, ECO:0000313|Proteomes:UP000006631}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C9-1 {ECO:0000313|EMBL:ADI78572.1,
RC ECO:0000313|Proteomes:UP000006631};
RC PLASMID=pPag3 {ECO:0000313|EMBL:ADI78572.1};
RX PubMed=20487014; DOI=10.1111/j.1574-6968.2010.01994.x;
RA Smits T.H., Rezzonico F., Pelludat C., Goesmann A., Frey J.E., Duffy B.;
RT "Genomic and phenotypic characterization of a nonpigmented variant of
RT Pantoea vagans biocontrol strain C9-1 lacking the 530-kb megaplasmid
RT pPag3.";
RL FEMS Microbiol. Lett. 308:48-54(2010).
RN [2] {ECO:0000313|EMBL:ADI78572.1, ECO:0000313|Proteomes:UP000006631}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C9-1 {ECO:0000313|EMBL:ADI78572.1,
RC ECO:0000313|Proteomes:UP000006631};
RC PLASMID=pPag3 {ECO:0000313|EMBL:ADI78572.1};
RX PubMed=20952567; DOI=10.1128/JB.01122-10;
RA Smits T.H., Rezzonico F., Kamber T., Goesmann A., Ishimaru C.A.,
RA Stockwell V.O., Frey J.E., Duffy B.;
RT "The genome sequence of the biocontrol agent Pantoea vagans strain C9-1.";
RL J. Bacteriol. 192:6486-6487(2010).
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DR EMBL; CP001895; ADI78572.1; -; Genomic_DNA.
DR RefSeq; WP_013196472.1; NC_014258.1.
DR AlphaFoldDB; D6YRD9; -.
DR KEGG; pva:Pvag_pPag30503; -.
DR HOGENOM; CLU_085376_5_1_6; -.
DR OrthoDB; 9810578at2; -.
DR Proteomes; UP000006631; Plasmid pPag3.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR CDD; cd02209; cupin_XRE_C; 1.
DR CDD; cd00093; HTH_XRE; 1.
DR Gene3D; 2.60.120.10; Jelly Rolls; 1.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR013096; Cupin_2.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR014710; RmlC-like_jellyroll.
DR InterPro; IPR011051; RmlC_Cupin_sf.
DR PANTHER; PTHR46797; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR46797:SF9; HTH-TYPE TRANSCRIPTIONAL REGULATOR SUTR; 1.
DR Pfam; PF07883; Cupin_2; 1.
DR Pfam; PF01381; HTH_3; 1.
DR SMART; SM00530; HTH_XRE; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR SUPFAM; SSF51182; RmlC-like cupins; 1.
DR PROSITE; PS50943; HTH_CROC1; 1.
PE 4: Predicted;
KW Plasmid {ECO:0000313|EMBL:ADI78572.1}.
FT DOMAIN 26..80
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000259|PROSITE:PS50943"
SQ SEQUENCE 200 AA; 21273 MW; 3403367FC1383C04 CRC64;
MTKKVNISTD AGADVATVSQ AVSDRIKSWR KSQKLSLDEL SRRAGVSKGM LVEIEKGAAN
PSIAILCKIA AALGVSVADI VSISHAPDAW LIENSEMPVL WQGEQGGSAQ LLAGTRGPDM
IELWRWQMFA GEAFSSTGHS SGTLELLHVE QGTLALTVGE QTLVIQQGCA AVARTDMPHA
YASANDQPVI FTMTVAELQR
//
