ID D7KXX4_ARALL Unreviewed; 1178 AA.
AC D7KXX4;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 08-NOV-2023, entry version 68.
DE SubName: Full=PDE317 {ECO:0000313|EMBL:EFH65012.1};
GN ORFNames=ARALYDRAFT_476131 {ECO:0000313|EMBL:EFH65012.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
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DR EMBL; GL348714; EFH65012.1; -; Genomic_DNA.
DR RefSeq; XP_002888753.1; XM_002888707.1.
DR AlphaFoldDB; D7KXX4; -.
DR STRING; 81972.D7KXX4; -.
DR EnsemblPlants; fgenesh2_kg.2__1261__AT1G70070.1; fgenesh2_kg.2__1261__AT1G70070.1; fgenesh2_kg.2__1261__AT1G70070.1.
DR GeneID; 9323339; -.
DR Gramene; fgenesh2_kg.2__1261__AT1G70070.1; fgenesh2_kg.2__1261__AT1G70070.1; fgenesh2_kg.2__1261__AT1G70070.1.
DR KEGG; aly:9323339; -.
DR eggNOG; KOG0947; Eukaryota.
DR HOGENOM; CLU_002902_4_0_1; -.
DR OrthoDB; 1352at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0009507; C:chloroplast; IEA:EnsemblPlants.
DR GO; GO:0010494; C:cytoplasmic stress granule; IEA:EnsemblPlants.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:1901259; P:chloroplast rRNA processing; IEA:EnsemblPlants.
DR GO; GO:0016554; P:cytidine to uridine editing; IEA:EnsemblPlants.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR GO; GO:0000373; P:Group II intron splicing; IEA:EnsemblPlants.
DR GO; GO:0006397; P:mRNA processing; IEA:EnsemblPlants.
DR GO; GO:0010497; P:plasmodesmata-mediated intercellular transport; IEA:EnsemblPlants.
DR GO; GO:0016441; P:post-transcriptional gene silencing; IEA:EnsemblPlants.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 1.10.3380.30; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR012961; Ski2/MTR4_C.
DR PANTHER; PTHR12131; ATP-DEPENDENT RNA AND DNA HELICASE; 1.
DR PANTHER; PTHR12131:SF8; HELICASE SKI2W; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF08148; DSHCT; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01142; DSHCT; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694}.
FT DOMAIN 170..334
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 443..627
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 53..119
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 671..733
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 912..980
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 64..116
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1178 AA; 133300 MW; 2C153FC91A109CBC CRC64;
MNTLPVVSLT PCSSFFKFFH FPSLHLSLSH SPNFCFTKSL ILNPNQLSFK SSLNSLSPSQ
SQLSEEYEED DDDEEEEEEE EEDEDDDDDE AADEYENISD EIGNSDDDEE TEFSVDLPTE
ESARERVEFR WQRVEKLRSL VRDFGVEMID IDELISIYDF RIDKFQRLAI EAFLRGSSVV
VSAPTSSGKT LIAEAAAVAT VAKGRRLFYT TPLKALSNQK FREFRETFGD DNVGLLTGDS
AINKDAQIVI MTTEILRNML YQSVGMASSG TGLFHVDAIV LDEVHYLSDI SRGTVWEETV
IYCPKEVQLI CLSATVANPD ELAGWIGEIH GKTELVTSTR RPVPLTWFFS TKHSLLPLLD
EKGTNVNRKL SLNYLQLSAS EARFRDDDDG YRKRRSKKRV GDTSYNSLVN ITDYPLSKNE
INKIRRSQVP QISDTLWHLQ GKDMLPAIWF IFNRRGCDAA VQYVENFQLL DDCEKSEVEL
ALKKFRVLYP DAVRESAEKG LLRGIAAHHA GCLPLWKSFI EELFQRGLVK VVFATETLAA
GINMPARTAV ISSLTKKAGN ERIQLGPNEL FQMAGRAGRR GIDEKGYTVL VQTAFEGAEE
CCKLVFAGVK PLVSQFTASY GMVLNLVAGS KVTRKSSGTE AGKVLQAGRS LEEAKKLVEK
SFGNYVSSNV TVAAKEELAE IDKKIEILSS EISDEAIDKK SRKLLSARDY KEITELKEEL
REEKRKRAEV RRRMELARFS ALKPLLKGME EGNLPFICLE FKDSEERQQS VPAIYLGHID
SFQGSKLQKM MSLDESFALN VIEDEPAADE PGKPNVKPSY YVALGSDNSW YLFTEKWVRT
VYRTGFPNIS LALGDALPRE IMKTLLDKAD MQWDKLAESE LGSLWRLEGS LETWSWSLNV
PVLSSLSDED EVLHMSEEYD NATEQYKEQR RKVFRLKKKM SRSAGFREYK KILENANLTV
EKMKRLKARS RRLINRLEQI EPSGWKDFMR ISNVIHESRA LDINTHLIFP LGETAAAIRG
ENELWLAMVL RNKALVDLKP PELAGVCASL VSEGIKVRPW RDNNYIYEPS DTVVDMVNFL
EDQRISLIKL QEKHEVMIPC CLDVQFSGMV EAWASGLSWK EMMMECAMDE GDLARLLRRT
IDLLAQIPKL PDIDPVLQRS AAAAADIMDR PPISELAG
//
