ID D7L0L0_ARALL Unreviewed; 499 AA.
AC D7L0L0;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 58.
DE RecName: Full=Nop domain-containing protein {ECO:0000259|PROSITE:PS51358};
GN ORFNames=ARALYDRAFT_478647 {ECO:0000313|EMBL:EFH59050.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus
CC {ECO:0000256|ARBA:ARBA00004604}.
CC -!- SIMILARITY: Belongs to the NOP5/NOP56 family.
CC {ECO:0000256|ARBA:ARBA00009211}.
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DR EMBL; GL348715; EFH59050.1; -; Genomic_DNA.
DR RefSeq; XP_002882791.1; XM_002882745.1.
DR AlphaFoldDB; D7L0L0; -.
DR STRING; 81972.D7L0L0; -.
DR EnsemblPlants; fgenesh2_kg.3__1348__AT3G12860.1; fgenesh2_kg.3__1348__AT3G12860.1; fgenesh2_kg.3__1348__AT3G12860.1.
DR GeneID; 9320997; -.
DR Gramene; fgenesh2_kg.3__1348__AT3G12860.1; fgenesh2_kg.3__1348__AT3G12860.1; fgenesh2_kg.3__1348__AT3G12860.1.
DR KEGG; aly:9320997; -.
DR eggNOG; KOG2573; Eukaryota.
DR HOGENOM; CLU_015495_4_0_1; -.
DR OrthoDB; 5489581at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0031428; C:box C/D RNP complex; IEA:InterPro.
DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR GO; GO:0032040; C:small-subunit processome; IEA:InterPro.
DR GO; GO:0030515; F:snoRNA binding; IEA:InterPro.
DR GO; GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
DR Gene3D; 1.10.287.4070; -; 1.
DR Gene3D; 1.10.246.90; Nop domain; 1.
DR InterPro; IPR045056; Nop56/Nop58.
DR InterPro; IPR012974; NOP58/56_N.
DR InterPro; IPR042239; Nop_C.
DR InterPro; IPR002687; Nop_dom.
DR InterPro; IPR036070; Nop_dom_sf.
DR InterPro; IPR012976; NOSIC.
DR PANTHER; PTHR10894:SF27; NOP56-LIKE PRE RNA PROCESSING RIBONUCLEOPROTEIN; 1.
DR PANTHER; PTHR10894; NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58; 1.
DR Pfam; PF01798; Nop; 1.
DR Pfam; PF08156; NOP5NT; 1.
DR SMART; SM00931; NOSIC; 1.
DR SUPFAM; SSF89124; Nop domain; 1.
DR PROSITE; PS51358; NOP; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694}.
FT DOMAIN 295..413
FT /note="Nop"
FT /evidence="ECO:0000259|PROSITE:PS51358"
FT REGION 434..499
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 434..485
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 499 AA; 56256 MW; C5943BEE611CC3C0 CRC64;
MAMYLLYESS SGYGLFEVHG LDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPSQSALDAL
NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE PKIGSCIFEA TKIPCQSNEF
VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFLLDT
LDKDINSFAM RVREWYSWHF PELVKIVNDN NLYARVSKII VDKSKLSEEH VPMLTEILGD
EDKAREVVEA GKASMGQDLS PVDLINVQSF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
SLIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLVFHSSFI
SRASAKNKGR IARFLANKCS IASRIDCFSD SSTTAFGEKL REQVEERLDF YDKGVAPRKN
VDVMKEVMEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVDGEELT
TENGHSKKKK KKTKSQDDE
//
