ID D7L3Z2_ARALL Unreviewed; 1932 AA.
AC D7L3Z2;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 70.
DE RecName: Full=PHD-type domain-containing protein {ECO:0000259|PROSITE:PS51805};
GN ORFNames=ARALYDRAFT_318288 {ECO:0000313|EMBL:EFH61329.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
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DR EMBL; GL348715; EFH61329.1; -; Genomic_DNA.
DR RefSeq; XP_002885070.1; XM_002885024.1.
DR STRING; 81972.D7L3Z2; -.
DR EnsemblPlants; fgenesh1_pm.C_scaffold_3001304; fgenesh1_pm.C_scaffold_3001304; fgenesh1_pm.C_scaffold_3001304.
DR GeneID; 9321136; -.
DR Gramene; fgenesh1_pm.C_scaffold_3001304; fgenesh1_pm.C_scaffold_3001304; fgenesh1_pm.C_scaffold_3001304.
DR KEGG; aly:9321136; -.
DR eggNOG; KOG0732; Eukaryota.
DR HOGENOM; CLU_001894_0_0_1; -.
DR OrthoDB; 553033at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR041569; AAA_lid_3.
DR InterPro; IPR045199; ATAD2-like.
DR InterPro; IPR003959; ATPase_AAA_core.
DR InterPro; IPR003960; ATPase_AAA_CS.
DR InterPro; IPR034732; EPHD.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR23069; AAA DOMAIN-CONTAINING; 1.
DR PANTHER; PTHR23069:SF7; P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN; 1.
DR Pfam; PF00004; AAA; 1.
DR Pfam; PF17862; AAA_lid_3; 1.
DR Pfam; PF13771; zf-HC5HC2H; 1.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00674; AAA; 1.
DR PROSITE; PS51805; EPHD; 1.
PE 4: Predicted;
KW Bromodomain {ECO:0000256|ARBA:ARBA00023117};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 466..604
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS51805"
FT REGION 28..279
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 322..345
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 383..414
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 466..492
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1352..1371
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1544..1600
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1701..1758
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 282..309
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 77..107
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 132..188
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 189..205
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 206..225
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 227..257
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 383..400
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 478..492
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1544..1572
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1701..1731
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1932 AA; 212417 MW; 6D3723EC14A64556 CRC64;
MKKNHSGSPS GKKSKKLAAI CEEEYKKNHG ESLDRDGGSG LACADSELRR SSRVRKIPSI
LDASPPPPKK RQRLNKHVDR SSSSIKKGKR NEDEDEDTLD GWKSRLRSRR KNVGSQASGR
QRRVVKGKRK LVFRNRACEL SDKAVESDRE EERRAPLGGG LIKTKKPVDV KESECSEDGE
KESDTSNSED ESASESEESM QADSEDREEV EEKMATKRSV VLDSENEAEV DGTETESEVG
TDSTDNEIDD SDEEGESETQ GSAEKTGSET EANVEEMRAD TNVRMEAVQN ESRNQMEELE
NEIEMGVEDE NKEMCVMVSE SGNGTGVLED ENKDMGVGVS GSGNGTGILE DDSNFAAKVK
NREGDTLHPE LLREASIEVN ESLEQNDDIG EQGVSRTPSN NKTKEHSEFL DRGSESVEML
DELPIQNETC KKAVDSVSTS SDRLGKPLFK QTRRCGLCGV GTDGKRPKKL MQDNGDSDVE
AHSGSSSSEE QNYDILDGFG DDPGWLGRLL GPINDRYGIS GTWVHQNCAV WSPEVYFAGV
GCLKNIRAAL FRGRSLKCTR CARPGATIGC RVDRCPRTYH LPCARANGCI FDHRKFLIAC
TDHRHHFQPH GRQCQVRLTK MKTKRMRLEM KKHSNDAWRK DVEAEEKWFE KCGEDEEFLK
RESKRLHRDL LRVAPEYIGG SDSESGKAFE GWDSVAGLEG VTQCMKEVVL IPLLYPEFFD
NLGLTPPRGI LLHGHPGTGK TLVVRALIGS LARGNRRIAY FARKGADCLG KYVGDAERQL
RLLFQVAEKC QPSIIFFDEI DGLAPKRSRQ QDQTHSSVVS TLLALLDGLK SRGSVVVIGA
TNYPDAIDPA LRRPGRFDRE IYFPLPSVDD RAAIISLHTR KWPKPVSGYL LKWVAKETAG
FAGADIQALC TQAAMIALNR SFPLQESLAA AELGVSSSNR AALPSFSVEE RDWLEALSRS
PPPCSRRGAG IAASDIFSSP LPTYLVPSLL PALCSLLVAL HLEERILLPP LLSKAAVDVQ
NVIRSALSDK KITEGCWWSH VATLLHEVDV VKDIVQRLSY TGILDGGSDL VRSVASIPGT
GDCSLGSAQF MVHRVCRRPG LLGNASVETT SKSGFQLLIA GGPKSGQRHL VSCILHCFIG
NAEMQKIDTA TISQEGNGDL VLGVTHLLIK CASRKSCVVF MPRIDLWAVE TETPLNKGIE
CDDASLKENC YSLFREMGEE KALQNAVRVS HAWNTFFEQV ESLRVSTKMM ILATSGMPYK
LLPPKIQQFF KTDLSKEYQP TMSEAVPQFN VQVVESSDHD IAIDLSATEL SRRAIQVFLH
LVHQGTHTHC GLQKKYKREN PDQGCRDAAY QNNTDHGAGE EAGVKSKPLD DGSLKVPPLP
ININVKAKSS LQLAVSTFGY QILQYPQFAE LCWVTSKLKE GPSADVSGPW RGWPFNSCIT
RPCNSSEQTI TSSDSNNVKG KDSTGIVRGL TAVGLSAYRG TYISLREVSF EVRKVLELLV
GRINVKINAG KDRCRYIRIL SQVAYLEDLV NSWVYAMRSF ESTTQTESAN PLPCSVVNPS
VRNEPTEQGT SDQSKGSEED LKEDTQNTNC PDPIASSNLT DTHQPVVEIA NGHSGTNHEP
FLEDTGHLTT HSTDGLTLVK ENVDVISNTE MVIEDSGVSS FRQAVLLDLN SPAADHEQNE
TPHGSCEVET TGTVISLQGK ADSLDNRNGS EDPNSISLKD PHKSADSNNG NAGDGVHGLE
SANNMPEPVE QVETTARTNP LDDPSLVCLY RCCSQCVSIL QDSMHKLVTR ELRLGRSSIT
TDGIHDAVSS LSVELIAAVR KFISAKNNGT MQEAKVEDHE ECPEKEACSC KSLSGKFLAS
VECCSHSAEL QGSLDEGNTY PSHKTWLEPL FVFRDGILVP VSTEDDRSLH CKYDRFCLGS
LIELIATEMK PF
//
