ID D7LMX5_ARALL Unreviewed; 242 AA.
AC D7LMX5;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 50.
DE RecName: Full=Exoribonuclease phosphorolytic domain-containing protein {ECO:0000259|Pfam:PF01138};
GN ORFNames=ARALYDRAFT_485002 {ECO:0000313|EMBL:EFH53723.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SIMILARITY: Belongs to the RNase PH family.
CC {ECO:0000256|ARBA:ARBA00006678}.
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DR EMBL; GL348717; EFH53723.1; -; Genomic_DNA.
DR RefSeq; XP_002877464.1; XM_002877418.1.
DR AlphaFoldDB; D7LMX5; -.
DR STRING; 81972.D7LMX5; -.
DR EnsemblPlants; fgenesh2_kg.5__994__AT3G46210.3; fgenesh2_kg.5__994__AT3G46210.3; fgenesh2_kg.5__994__AT3G46210.3.
DR Gramene; fgenesh2_kg.5__994__AT3G46210.3; fgenesh2_kg.5__994__AT3G46210.3; fgenesh2_kg.5__994__AT3G46210.3.
DR eggNOG; KOG1069; Eukaryota.
DR HOGENOM; CLU_063514_2_3_1; -.
DR OrthoDB; 2996330at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
DR GO; GO:0004536; F:DNA nuclease activity; IEA:EnsemblPlants.
DR GO; GO:0003690; F:double-stranded DNA binding; IEA:EnsemblPlants.
DR GO; GO:0042802; F:identical protein binding; IEA:EnsemblPlants.
DR GO; GO:0004540; F:RNA nuclease activity; IEA:EnsemblPlants.
DR GO; GO:0003727; F:single-stranded RNA binding; IEA:EnsemblPlants.
DR CDD; cd11372; RNase_PH_RRP46; 1.
DR Gene3D; 3.30.230.70; GHMP Kinase, N-terminal domain; 1.
DR InterPro; IPR001247; ExoRNase_PH_dom1.
DR InterPro; IPR036345; ExoRNase_PH_dom2_sf.
DR InterPro; IPR027408; PNPase/RNase_PH_dom_sf.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR PANTHER; PTHR11953; EXOSOME COMPLEX COMPONENT; 1.
DR PANTHER; PTHR11953:SF1; EXOSOME COMPLEX COMPONENT RRP46; 1.
DR Pfam; PF01138; RNase_PH; 1.
DR SUPFAM; SSF55666; Ribonuclease PH domain 2-like; 1.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
PE 3: Inferred from homology;
KW Exosome {ECO:0000256|ARBA:ARBA00022835};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694}.
FT DOMAIN 13..133
FT /note="Exoribonuclease phosphorolytic"
FT /evidence="ECO:0000259|Pfam:PF01138"
SQ SEQUENCE 242 AA; 26185 MW; 3E66AB0061877959 CRC64;
MEIDREDGRT PNQLRPLACS RNILHRPHGS ASWSQGDTKV LAAVYGPKAG TKKNENAEKA
CFEVIWKPKT GQIGKVEKEY EMIMKRTIQS ICVLTVNPNT TTSVIIQVVH DDGSLLPCAI
NAACAALVDA GIPMKHLAVA ICCCLADNGY LVLDPNKLEE KKMTAFAYLV FPNTTLSVLP
EGSSVAEGEP VEHGIITSVT HGVMSVDDYF LCVENGRAAT ASLSAFFRKN FQQSQKDSSK
AG
//
