ID D7TCM6_VITVI Unreviewed; 372 AA.
AC D7TCM6;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 24-JAN-2024, entry version 74.
DE RecName: Full=THO complex subunit 6 {ECO:0008006|Google:ProtNLM};
GN OrderedLocusNames=VIT_11s0016g01910 {ECO:0000313|EMBL:CBI27884.3};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CBI27884.3, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
CC -!- SIMILARITY: Belongs to the WD repeat THOC6 family.
CC {ECO:0000256|ARBA:ARBA00009728}.
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DR EMBL; FN595756; CBI27884.3; -; Genomic_DNA.
DR AlphaFoldDB; D7TCM6; -.
DR STRING; 29760.D7TCM6; -.
DR PaxDb; 29760-VIT_11s0016g01910-t01; -.
DR EnsemblPlants; Vitvi11g00151_t002; Vitvi11g00151_P002; Vitvi11g00151.
DR Gramene; Vitvi11g00151_t002; Vitvi11g00151_P002; Vitvi11g00151.
DR eggNOG; KOG0649; Eukaryota.
DR HOGENOM; CLU_060667_0_0_1; -.
DR InParanoid; D7TCM6; -.
DR OMA; HLRSMEC; -.
DR Proteomes; UP000009183; Chromosome 11.
DR GO; GO:0000347; C:THO complex; IBA:GO_Central.
DR GO; GO:0000346; C:transcription export complex; IBA:GO_Central.
DR GO; GO:0006406; P:mRNA export from nucleus; IBA:GO_Central.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR InterPro; IPR042626; THOC6.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR44411; THO COMPLEX SUBUNIT 6 HOMOLOG; 1.
DR PANTHER; PTHR44411:SF1; THO COMPLEX SUBUNIT 6 HOMOLOG; 1.
DR Pfam; PF00400; WD40; 2.
DR SMART; SM00320; WD40; 5.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 2.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT REPEAT 89..122
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 200..241
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
SQ SEQUENCE 372 AA; 40467 MW; 1CAE73C2A973A3F3 CRC64;
MGSDARDWDE DGYRNSILKE REIQTRTVFR AIFAPSQNPN PDVIVVASSD GTLASYSISS
CISQLSGFGN ARPRKSLLGL PVAEPNCFLQ GHDGPAYDVK FYGDGEESLL LSCGDDGRIR
GWRWKEITQS EVHIPLQGNH VEPVLDLVNP QHKGPWGALS PVPENNAIAV NAQWGSVFAA
AGDSCAYCWD VEKSKIKMVF KGHSDYLHCI IARNSSNQII TGSEDGTARI WDCQSGKCIQ
VIDAKKDKKP KEIFSCVSCI ALDASESWLA YGRGRSLSVW NLPACERVTR VSTHASFQDI
VFDDNQILAV GAEPLLSRFD INGVILSQIQ CAPQSAFSVS LHPSGVTAVA GYGGVVDVIS
QFGSHLCTFR GR
//
