ID D8RI44_SELML Unreviewed; 1538 AA.
AC D8RI44;
DT 05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2010, sequence version 1.
DT 27-MAR-2024, entry version 69.
DE RecName: Full=SNF2 family DNA-dependent ATPase {ECO:0008006|Google:ProtNLM};
GN ORFNames=SELMODRAFT_411494 {ECO:0000313|EMBL:EFJ28029.1};
OS Selaginella moellendorffii (Spikemoss).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella.
OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514};
RN [1] {ECO:0000313|EMBL:EFJ28029.1, ECO:0000313|Proteomes:UP000001514}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=21551031; DOI=10.1126/science.1203810;
RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M.,
RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W.,
RA Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D.,
RA Chapple C., Cheng C., Correa L.G., Dacre M., DeBarry J., Dreyer I.,
RA Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K.,
RA Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M.,
RA Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G.,
RA Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y.,
RA Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K.,
RA Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R.,
RA Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B.,
RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y.,
RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N.,
RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N.,
RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S.,
RA Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q.,
RA Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J.,
RA Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.;
RT "The Selaginella genome identifies genetic changes associated with the
RT evolution of vascular plants.";
RL Science 332:960-963(2011).
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DR EMBL; GL377580; EFJ28029.1; -; Genomic_DNA.
DR RefSeq; XP_002970703.1; XM_002970657.1.
DR STRING; 88036.D8RI44; -.
DR EnsemblPlants; EFJ28029; EFJ28029; SELMODRAFT_411494.
DR Gramene; EFJ28029; EFJ28029; SELMODRAFT_411494.
DR KEGG; smo:SELMODRAFT_411494; -.
DR eggNOG; KOG0384; Eukaryota.
DR HOGENOM; CLU_000315_28_0_1; -.
DR InParanoid; D8RI44; -.
DR OMA; REICQQH; -.
DR Proteomes; UP000001514; Unassembled WGS sequence.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0016887; F:ATP hydrolysis activity; IBA:GO_Central.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IBA:GO_Central.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0042393; F:histone binding; IBA:GO_Central.
DR GO; GO:0034728; P:nucleosome organization; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd18660; CD1_tandem; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 2.40.50.40; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR InterPro; IPR025260; CHD1-like_C.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR PANTHER; PTHR45623:SF14; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1; 1.
DR PANTHER; PTHR45623; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED; 1.
DR Pfam; PF13907; CHD1-like_C; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01176; DUF4208; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS50013; CHROMO_2; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000001514};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT DOMAIN 277..365
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT DOMAIN 467..636
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 768..919
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..277
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1042..1076
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1267..1363
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1460..1538
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..16
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 26..54
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 89..113
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 123..138
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 184..211
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 233..250
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 258..277
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1042..1065
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1267..1302
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1303..1319
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1344..1363
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1477..1519
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1538 AA; 175832 MW; 92EAB0338ADF5ED8 CRC64;
MMSEYEEADE SNENEDSFVG QQEHFSSRPR KSRYEPSDGD DASQSDHGDP EYKEDSGDEN
YEDGGYENGA ASYRYSTVES RDFQLEPEES EEYVMEEEEE DDNGGDDPQD ADFDPVSPEN
NFSQQEEDDD DDYNASAEEQ EEAASTGGFD VSSDEELVRP ANPRKRPAIK IAQPRFGSNN
QKRHRIVQKK DYPSDEEDSS DGEDQRNHRK VVVASSIRPV VIAPSQRAPA DFSSRETRSR
RSIPRKSYVE EESEEDEEDQ KAKKKVSPDE IEEEDSDKIE RVVWHQPKGI AEAEMLEGRK
AEPFILDTDP HADLDWEEQE FYIKWKGQSY LHCQWQGLAD LHQLSGYKKV VNYMKKVEED
RQKRRNLSGE EAEVHDLSKE MELDLLKQYT QVFVTTIPVE KDIDLAFAQD FIDEYKERES
ASNFQGKSVD FQRKRGKLIL RKLEEQPEWL KGGKLRDYQL EGLNFLVNGW RMNTNVILAD
EMGLGKTVQS LSMLGYLQYN LEILGPFLVV VPLSTIANWA KEFRKWLPNM NVLVYVGNVA
SREMCQKYEF FTASGRAKFN TLITTYELVL KDKDVLSQFK WDFLMVDEAH RLKNNEAALY
TELMKFSAKN KVLVTGTPLQ NNVEELWALL HFLDPIKFRN KDDYKNLVSF NEAELARLHA
ELRPHLLRRV IKDVEKSLPP KIERILRVEM SPLQKQYYKW ILERNFSDLN KGVRGNQVSL
LNIVVELKKC CNHPFLFESA DHGYGANATM TDNSRVQRVV LSSGKLVLLD KLLVRLKETG
HRVLIFSQMV KMLDILADYL RLRGFQFQRL DGSTKHHLRQ QAMEHFNAPG SEDFCFLLST
RAGGLGINLA TADTVIIFDS DWNPQNDLQA MSRAHRIGQE FVVNIYRFVT CRSVEEDILE
RAKKKMVLDH LVIQKLNAQG RLEMKETKKA TTMFDKNELA AILKFGAEEL FKEEKKSEEE
AKSKLENMDI DEILERAEKV SGDTEQPGGE LLGAFKVANF SQGEDDAAFW SRLIPAETAK
EAPDLGPRAA RKIRTYAEDL PADRYSKRRK NAEEVGRKRS TRLSRAPEPP PRVDGASAHV
YEWEGTTISK RDANAFVKGV KKFGDKSRID MIVVNTGSAI ENASEDSQLD LMDALLDGCT
EAVDNSHNPK AAILDFFGVT VKAQEVLTRV KELTLLGKRI RRYQDPVSQF RLRSHSKNPS
SMWSRWSQVD DARLLLGVYY HGYGNWEKIR TDERLLLGKK MAPGGATAGE TSLPRATHLD
ARVNTLLRKE TELDKGSNGE TSKSRSKRNQ ESSSKLRQGK DRASNSSRPS GTRKSARNIN
RENAAIAAAA REEAEDKEEG EISDDDESTQ RRPKGVTDEK ERDQRWHNWC EGVMKGEVRT
LKRLQNLKSA HSESNEKVVV RVKKYLQKLG QKIDSILDDN KGEKCNPQKM AMRLWNYVAR
FSDLSGPDLS DLYHKLKRQP EAAAPSAASV ENNNENNGTS REKHEPLTYK RRHGRKDNAE
SSKRRRKGGD EEETGARNSS ADKAHYFYGK GDFSQGPS
//
