ID D8RQL4_SELML Unreviewed; 175 AA.
AC D8RQL4;
DT 05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2010, sequence version 1.
DT 24-JAN-2024, entry version 55.
DE RecName: Full=MATH domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SELMODRAFT_105350 {ECO:0000313|EMBL:EFJ22277.1},
GN SELMODRAFT_98932 {ECO:0000313|EMBL:EFJ25670.1};
OS Selaginella moellendorffii (Spikemoss).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella.
OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514};
RN [1] {ECO:0000313|EMBL:EFJ25670.1, ECO:0000313|Proteomes:UP000001514}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=21551031; DOI=10.1126/science.1203810;
RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M.,
RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W.,
RA Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D.,
RA Chapple C., Cheng C., Correa L.G., Dacre M., DeBarry J., Dreyer I.,
RA Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K.,
RA Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M.,
RA Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G.,
RA Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y.,
RA Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K.,
RA Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R.,
RA Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B.,
RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y.,
RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N.,
RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N.,
RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S.,
RA Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q.,
RA Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J.,
RA Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.;
RT "The Selaginella genome identifies genetic changes associated with the
RT evolution of vascular plants.";
RL Science 332:960-963(2011).
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DR EMBL; GL377596; EFJ22277.1; -; Genomic_DNA.
DR EMBL; GL377586; EFJ25670.1; -; Genomic_DNA.
DR RefSeq; XP_002973296.1; XM_002973250.1.
DR RefSeq; XP_002976608.1; XM_002976562.1.
DR AlphaFoldDB; D8RQL4; -.
DR STRING; 88036.D8RQL4; -.
DR EnsemblPlants; EFJ22277; EFJ22277; SELMODRAFT_105350.
DR EnsemblPlants; EFJ25670; EFJ25670; SELMODRAFT_98932.
DR GeneID; 9637773; -.
DR GeneID; 9649759; -.
DR Gramene; EFJ22277; EFJ22277; SELMODRAFT_105350.
DR Gramene; EFJ25670; EFJ25670; SELMODRAFT_98932.
DR KEGG; smo:SELMODRAFT_105350; -.
DR KEGG; smo:SELMODRAFT_98932; -.
DR eggNOG; KOG3298; Eukaryota.
DR HOGENOM; CLU_085878_3_0_1; -.
DR InParanoid; D8RQL4; -.
DR OMA; VERKMFI; -.
DR OrthoDB; 1209705at2759; -.
DR Proteomes; UP000001514; Unassembled WGS sequence.
DR GO; GO:0000932; C:P-body; IBA:GO_Central.
DR GO; GO:0005665; C:RNA polymerase II, core complex; IBA:GO_Central.
DR GO; GO:0003697; F:single-stranded DNA binding; IBA:GO_Central.
DR GO; GO:0003727; F:single-stranded RNA binding; IBA:GO_Central.
DR GO; GO:0031369; F:translation initiation factor binding; IBA:GO_Central.
DR GO; GO:0000291; P:nuclear-transcribed mRNA catabolic process, exonucleolytic; IBA:GO_Central.
DR GO; GO:0060213; P:positive regulation of nuclear-transcribed mRNA poly(A) tail shortening; IBA:GO_Central.
DR GO; GO:0045948; P:positive regulation of translational initiation; IBA:GO_Central.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IBA:GO_Central.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 3.30.1490.120; RNA polymerase Rpb7-like, N-terminal domain; 1.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR036898; RNA_pol_Rpb7-like_N_sf.
DR InterPro; IPR045113; Rpb7-like.
DR PANTHER; PTHR12709:SF4; DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7; 1.
DR PANTHER; PTHR12709; DNA-DIRECTED RNA POLYMERASE II, III; 1.
DR SUPFAM; SSF88798; N-terminal, heterodimerisation domain of RBP7 (RpoE); 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
PE 4: Predicted;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Reference proteome {ECO:0000313|Proteomes:UP000001514};
KW Transcription {ECO:0000256|ARBA:ARBA00023163}.
SQ SEQUENCE 175 AA; 19451 MW; BCE8E2112D6F56E7 CRC64;
MWWEISLRRD VIVHPRHMDP SGGHRRWIIQ TLLEDMEDLQ CSREHGYYVA PTTLSKVSGG
MIRESGGVSY KVDFKCMVFK LIKNEIVELE IENVKQSGAE ASCGPYTAIF LHHSLMTGFV
YSNENGPCFK NSDGVVISKG CAVRAKILGG QFMGDGFRCL ATINDAHLGV INPEG
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