ID F2HHX7_9CRYP Unreviewed; 414 AA.
AC F2HHX7;
DT 31-MAY-2011, integrated into UniProtKB/TrEMBL.
DT 31-MAY-2011, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE SubName: Full=RNA-polymerase sigma factor {ECO:0000313|EMBL:AEA38923.1};
GN Name=rpoD {ECO:0000313|EMBL:AEA38923.1};
GN ORFNames=CPARA_2gp265 {ECO:0000313|EMBL:AEA38923.1};
OS Cryptomonas paramecium.
OG Nucleomorph {ECO:0000313|EMBL:AEA38923.1}.
OC Eukaryota; Cryptophyceae; Cryptomonadales; Cryptomonadaceae; Cryptomonas.
OX NCBI_TaxID=2898 {ECO:0000313|EMBL:AEA38923.1, ECO:0000313|Proteomes:UP000243423};
RN [1] {ECO:0000313|EMBL:AEA38923.1, ECO:0000313|Proteomes:UP000243423}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCAP977/2A {ECO:0000313|EMBL:AEA38923.1,
RC ECO:0000313|Proteomes:UP000243423};
RX PubMed=21147880; DOI=10.1093/gbe/evq082;
RA Tanifuji G., Onodera N.T., Wheeler T.J., Dlutek M., Donaher N.,
RA Archibald J.M.;
RT "Complete nucleomorph genome sequence of the nonphotosynthetic alga
RT Cryptomonas paramecium reveals a core nucleomorph gene set.";
RL Genome Biol. Evol. 3:44-54(2011).
CC -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC {ECO:0000256|ARBA:ARBA00007788}.
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DR EMBL; CP002173; AEA38923.1; -; Genomic_DNA.
DR RefSeq; XP_003239821.1; XM_003239773.1.
DR AlphaFoldDB; F2HHX7; -.
DR EnsemblProtists; AEA38923; AEA38923; CPARA_2gp265.
DR GeneID; 10447164; -.
DR Proteomes; UP000243423; Chromosome 2.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF62; RNA POLYMERASE SIGMA FACTOR SIGA; 1.
DR Pfam; PF00140; Sigma70_r1_2; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS00716; SIGMA70_2; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleomorph {ECO:0000313|EMBL:AEA38923.1};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 356..382
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00716"
SQ SEQUENCE 414 AA; 48501 MW; D5BC245800AC7AAC CRC64;
MLKNFLGLNN KLIFIHRVHL NFKKNWLEFN LINNVEKNFY EVKKNEVKKI IKSFNTQREF
KNKIEEPEVA KFQSETKPVH KSDDSVRWYL QLIGKVKLLK PEEEIQLARE ISQLLQWEHI
KVFLKEKLGR EPTALEWSAA CKISDVQKFK TVLYNSRKAK ERMIAANLRL VVSIAKRYSN
RGMSLQDLVQ EGSLGLIRAT EKFDSEKGFK FSTYATWWIK QSVSRAIADH SRTIRLPVHL
YDTLSAIKKT TRILTIELGR SPTEEEIACK MDVTVDKLRS VLQSAQPTLS LEKPIKNDGD
TAQLSDFIEA DQESPDEHVE KSMLRDDLRD VINSLSLRER DVIRMRYGLD DGKIRTLEEI
GQIFSVTRER VRQIEAKAIR KLRQPYRSSI FKDHSYTHLN TSEKIFDQKY QSRK
//
