ID F4I9F8_ARATH Unreviewed; 344 AA.
AC F4I9F8;
DT 28-JUN-2011, integrated into UniProtKB/TrEMBL.
DT 28-JUN-2011, sequence version 1.
DT 27-MAR-2024, entry version 72.
DE SubName: Full=RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:AEE31375.1};
GN Name=TRM9 {ECO:0000313|EMBL:AEE31375.1, ECO:0000313|TAIR:AT1G31600};
GN Synonyms=AtTRM9 {ECO:0000313|EMBL:AEE31375.1}, tRNA methyltransferase
GN 9 {ECO:0000313|EMBL:AEE31375.1};
GN OrderedLocusNames=At1g31600 {ECO:0000313|Araport:AT1G31600,
GN ECO:0000313|EMBL:AEE31375.1}, At1g31610 {ECO:0000313|EMBL:AEE31375.1};
GN ORFNames=F27M3.19 {ECO:0000313|EMBL:AEE31375.1}, F27M3_19
GN {ECO:0000313|EMBL:AEE31375.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AEE31375.1, ECO:0000313|Proteomes:UP000006548};
RN [1] {ECO:0000313|EMBL:AEE31375.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- SIMILARITY: Belongs to the alkB family.
CC {ECO:0000256|ARBA:ARBA00007879}.
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DR EMBL; CP002684; AEE31375.1; -; Genomic_DNA.
DR RefSeq; NP_973945.1; NM_202216.1.
DR AlphaFoldDB; F4I9F8; -.
DR SMR; F4I9F8; -.
DR EnsemblPlants; AT1G31600.2; AT1G31600.2; AT1G31600.
DR GeneID; 840048; -.
DR Gramene; AT1G31600.2; AT1G31600.2; AT1G31600.
DR Araport; AT1G31600; -.
DR TAIR; AT1G31600; TRM9.
DR HOGENOM; CLU_052246_0_0_1; -.
DR OMA; LHGRPCP; -.
DR PhylomeDB; F4I9F8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; F4I9F8; baseline and differential.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0070988; P:demethylation; IEA:InterPro.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 2.60.120.590; Alpha-ketoglutarate-dependent dioxygenase AlkB-like; 1.
DR InterPro; IPR027450; AlkB-like.
DR InterPro; IPR037151; AlkB-like_sf.
DR InterPro; IPR032857; ALKBH4.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR005123; Oxoglu/Fe-dep_dioxygenase.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR12463:SF1; FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR12463; OXYGENASE-RELATED; 1.
DR Pfam; PF13532; 2OG-FeII_Oxy_2; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS51471; FE2OG_OXY; 1.
DR PROSITE; PS50102; RRM; 1.
PE 1: Evidence at protein level;
KW Proteomics identification {ECO:0007829|PeptideAtlas:F4I9F8};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 24..102
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 206..326
FT /note="Fe2OG dioxygenase"
FT /evidence="ECO:0000259|PROSITE:PS51471"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 344 AA; 38194 MW; 0E2D76DA5B239A03 CRC64;
MVQPRFVRPT QSSPSSISGE PNSSNLYVAN CGPAVGLTHN AIAAVFAEFG EVNGVYAADD
SGVRVIVSFA DPFSAKAALE ALSGRPCPDL KGRSLHIRYS VLQLPSEVND CVPVSLIDSE
LNIPGLFLLP DFVTVAEEQQ LLAAVDARHW IGLAKRRVQH YGYEFCYGTR NVDTKKRLGE
LPSFVSPILE RIYLFPNFDN GSASLNLDQL TVNEYPSGVG LSPHIDTHSA FEDCIFSLSL
AGPCIMEFRR YSVSTWKAST TDAEKSGDSS CIKKALYLPP RSMLLLSGEA RYAWNHYIPH
HKIDKVKDKV IRRSSRRVSF TLRKVRNHPC SCKYPQYCDS QQQM
//
