ID F6GVM6_VITVI Unreviewed; 726 AA.
AC F6GVM6;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 24-JAN-2024, entry version 65.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN OrderedLocusNames=VIT_01s0137g00640 {ECO:0000313|EMBL:CCB43988.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CCB43988.1, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC Evidence={ECO:0000256|ARBA:ARBA00001556};
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DR EMBL; FN594954; CCB43988.1; -; Genomic_DNA.
DR RefSeq; XP_002282341.3; XM_002282305.4.
DR RefSeq; XP_019075489.1; XM_019219944.1.
DR RefSeq; XP_019075490.1; XM_019219945.1.
DR AlphaFoldDB; F6GVM6; -.
DR STRING; 29760.F6GVM6; -.
DR PaxDb; 29760-VIT_01s0137g00640-t01; -.
DR EnsemblPlants; Vitvi01g00630_t001; Vitvi01g00630_P001; Vitvi01g00630.
DR GeneID; 100262984; -.
DR Gramene; Vitvi01g00630_t001; Vitvi01g00630_P001; Vitvi01g00630.
DR KEGG; vvi:100262984; -.
DR eggNOG; KOG0922; Eukaryota.
DR HOGENOM; CLU_001832_5_11_1; -.
DR InParanoid; F6GVM6; -.
DR OrthoDB; 3682876at2759; -.
DR Proteomes; UP000009183; Chromosome 1.
DR GO; GO:0005730; C:nucleolus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003725; F:double-stranded RNA binding; IBA:GO_Central.
DR GO; GO:0004386; F:helicase activity; IBA:GO_Central.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR GO; GO:0045943; P:positive regulation of transcription by RNA polymerase I; IBA:GO_Central.
DR CDD; cd17978; DEXHc_DHX33; 1.
DR CDD; cd18791; SF2_C_RHA; 1.
DR Gene3D; 1.20.120.1080; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR002464; DNA/RNA_helicase_DEAH_CS.
DR InterPro; IPR048333; HA2_WH.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR PANTHER; PTHR18934:SF118; ATP-DEPENDENT RNA HELICASE DHX33; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF21010; HA2_C; 1.
DR Pfam; PF04408; HA2_N; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00690; DEAH_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000009183}.
FT DOMAIN 60..265
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 288..462
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
SQ SEQUENCE 726 AA; 81831 MW; C309E12DA74A0772 CRC64;
MTNNNNNNIP VNEMHWPLVD KADKKKPKIR DLPYCQGNRK QRLEQQRKAL PIASVEKRLV
EEVQKNDTLI IVGETGSGKT TQLPQFLLNG GFCHDGKIIG ITQPRRVAAV TVAKRVAEEC
GVELGQKVGY SIRFEDVTSS STRIKYMTDG LLLREALLDP FLSRYSVIIV DEAHERTIHT
DVLLGLLKNV QNARSRSINK CLNIENTEAN YGKLLKREND ANCVSILKRC QGVKFPSLKL
IIMSASLDAR GFSEYFGGAR SVYIQGRQFP VDIFYTHHAE PDYVDAALIT IFQIHLEEGP
GDILVFLTGQ EEIESVERLV QERLRQLPEG SQKLLTVPIF SSLPSEQQMK AFMPAPAGFR
KVILATNIAE TSVTIPGIKY VIDPGVVKAR TYNAHTGIES LDIVKTSKAQ ALQRSGRAGR
ERPGKCFRLY PESEFGQLAD STEPEIKRCN LSNVILQLKA LGVDDIIGFD FLEKPSRMAI
VKSLEQLFLL GAITDDSKLS DPIGHQMARL PLDPVYSKAL ILASQFNCLE EMLIAVAMLS
VESIFYTPRE KLEEARTAMK CFSSPEGDHI TLINVYRASD EFVEKIKQGN DKEKTEKKLR
KWCKENFINS RSLRHARDIH SQIRRHAEQM GLCVASCGDD MLQFRRCLAA SFFLNAALKQ
PEGTYRALAS GQSVRIHPSS VLFRTKPECI IFNELVQTNH CYIRNITRID FLWLPELAPQ
YYAVQN
//
