ID F7JYM7_9FIRM Unreviewed; 442 AA.
AC F7JYM7;
DT 21-SEP-2011, integrated into UniProtKB/TrEMBL.
DT 21-SEP-2011, sequence version 1.
DT 24-JAN-2024, entry version 43.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:EGN46543.1};
GN ORFNames=HMPREF0991_02240 {ECO:0000313|EMBL:EGN46543.1};
OS Lachnospiraceae bacterium 2_1_58FAA.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Lachnospiraceae.
OX NCBI_TaxID=658082 {ECO:0000313|EMBL:EGN46543.1, ECO:0000313|Proteomes:UP000004820};
RN [1] {ECO:0000313|EMBL:EGN46543.1, ECO:0000313|Proteomes:UP000004820}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=2_1_58FAA {ECO:0000313|EMBL:EGN46543.1,
RC ECO:0000313|Proteomes:UP000004820};
RG The Broad Institute Genome Sequencing Platform;
RA Earl A., Ward D., Feldgarden M., Gevers D., Daigneault M., Strauss J.,
RA Allen-Vercoe E., Young S.K., Zeng Q., Gargeya S., Fitzgerald M., Haas B.,
RA Abouelleil A., Alvarado L., Arachchi H.M., Berlin A., Brown A.,
RA Chapman S.B., Chen Z., Dunbar C., Freedman E., Gearin G., Gellesch M.,
RA Goldberg J., Griggs A., Gujja S., Heiman D., Howarth C., Larson L., Lui A.,
RA MacDonald P.J.P., Mehta T., Montmayeur A., Murphy C., Neiman D.,
RA Pearson M., Priest M., Roberts A., Saif S., Shea T., Shenoy N., Sisk P.,
RA Stolte C., Sykes S., Wortman J., Nusbaum C., Birren B.;
RT "The Genome Sequence of Lachnospiraceae bacterium 2_1_58FAA.";
RL Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EGN46543.1}.
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DR EMBL; ACTO01000031; EGN46543.1; -; Genomic_DNA.
DR AlphaFoldDB; F7JYM7; -.
DR PATRIC; fig|658082.3.peg.2270; -.
DR HOGENOM; CLU_020569_1_0_9; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000004820; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 95..275
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 288..439
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 442 AA; 50634 MW; 6305554BC49B6C74 CRC64;
MGLELKVEQK QRVYQKQIEQ ARILQMNAQE IAVYIQEVAL ENPLIEVEEL AEAPLEELVR
EDMRKSDETG VTASEDTDWS YAGGHQLLED WWTLQEESLV DIIHQQLLTM PIGEKEKKIV
EKLAGSLDSR GYLEISVKKL AEYIPCSVRE LRSALEILKS LEPAGIGAAD LKECLILQLK
RQKDSRLAIT LVKNYLEDLS KHKISAIAKE LGEEEAAVRD AFSRIRTLNP KPGRIYGRNT
GGYVIPDIIV SKEHGKYIAE LNEAVYRELR LNEFYVKLRD SKEAEVREYI MQKQAQAEWL
RACIEQRSHT LQRIADILVD FQRMFLDSGK DMKPIRQKDV AQIMEVNEST ISRAVKGKYL
QCGWGVYALS DFMPKGTEEV SSDSVKLMLR NFIQSEDKKK PLSDQKLAQK LGEEGIQISR
RTVAKYRMQM NILDAAGRRG EF
//
