ID G6AYD4_9BACT Unreviewed; 290 AA.
AC G6AYD4;
DT 25-JAN-2012, integrated into UniProtKB/TrEMBL.
DT 25-JAN-2012, sequence version 1.
DT 27-MAR-2024, entry version 53.
DE SubName: Full=RNA polymerase sigma factor RpoD family protein {ECO:0000313|EMBL:EHJ39381.1};
GN ORFNames=HMPREF0673_01644 {ECO:0000313|EMBL:EHJ39381.1};
OS Leyella stercorea DSM 18206.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae;
OC Leyella.
OX NCBI_TaxID=1002367 {ECO:0000313|EMBL:EHJ39381.1, ECO:0000313|Proteomes:UP000004407};
RN [1] {ECO:0000313|EMBL:EHJ39381.1, ECO:0000313|Proteomes:UP000004407}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 18206 {ECO:0000313|EMBL:EHJ39381.1,
RC ECO:0000313|Proteomes:UP000004407};
RA Weinstock G., Sodergren E., Clifton S., Fulton L., Fulton B., Courtney L.,
RA Fronick C., Harrison M., Strong C., Farmer C., Delahaunty K., Markovic C.,
RA Hall O., Minx P., Tomlinson C., Mitreva M., Hou S., Chen J., Wollam A.,
RA Pepin K.H., Johnson M., Bhonagiri V., Zhang X., Suruliraj S., Warren W.,
RA Chinwalla A., Mardis E.R., Wilson R.K.;
RL Submitted (AUG-2011) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EHJ39381.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AFZZ01000147; EHJ39381.1; -; Genomic_DNA.
DR RefSeq; WP_007900209.1; NZ_JH379436.1.
DR AlphaFoldDB; G6AYD4; -.
DR GeneID; 78337285; -.
DR PATRIC; fig|1002367.3.peg.1328; -.
DR eggNOG; COG0568; Bacteria.
DR HOGENOM; CLU_014793_3_5_10; -.
DR Proteomes; UP000004407; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF47; RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC; 1.
DR Pfam; PF00140; Sigma70_r1_2; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PIRSF; PIRSF000770; RNA_pol_sigma-SigE/K; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 17..48
FT /note="RNA polymerase sigma-70 region 1.2"
FT /evidence="ECO:0000259|Pfam:PF00140"
FT DOMAIN 57..126
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 138..205
FT /note="RNA polymerase sigma-70 region 3"
FT /evidence="ECO:0000259|Pfam:PF04539"
FT DOMAIN 229..277
FT /note="RNA polymerase sigma-70 region 4"
FT /evidence="ECO:0000259|Pfam:PF04545"
SQ SEQUENCE 290 AA; 32815 MW; 1BD47F8598774FD2 CRC64;
MRQLKIQKSI TNRSSEALDK YLVEIGRAPL ITIDEEIELA QKIKKGGPEG ERAKDKLVTA
NLRFVVSVAK QYQHQGLTLT DLIDEGNIGL IKAAQKFDET RGFKFISYAV WWIRQSILQA
IAEQSRIVRL PLNQVGSLNK INHEINKFEQ ENQRHPSVSE LSEATNIDEE KIGQSLMADG
HHVSIDAPFQ DGEDNCMLDV MPSGEDSRTD RQVDHESMAL ELNSVLNKVL KDREITIIRE
CFGIGCHEKG LEEIGDQLGL TRERVRQIRE KSIAKLRDSG NAKILMKYLG
//
